Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0487 and Dsui_0488 overlap by 4 nucleotides Dsui_0488 and Dsui_0489 are separated by 72 nucleotides Dsui_0489 and Dsui_0490 are separated by 68 nucleotides
Dsui_0487: Dsui_0487 - hemerythrin HHE cation binding domain-containing protein, at 490,087 to 490,620
_0487
Dsui_0488: Dsui_0488 - EamA-like transporter family, at 490,617 to 491,474
_0488
Dsui_0489: Dsui_0489 - DNA-binding regulatory protein, YebC/PmpR family, at 491,547 to 492,272
_0489
Dsui_0490: Dsui_0490 - putative ATPase, at 492,341 to 493,861
_0490
Position (kb) 491
492
493 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 490.611 kb on - strand at 490.715 kb on + strand, within Dsui_0488 at 490.723 kb on - strand, within Dsui_0488 at 490.728 kb on - strand, within Dsui_0488 at 490.738 kb on - strand, within Dsui_0488 at 490.791 kb on - strand, within Dsui_0488 at 490.849 kb on + strand, within Dsui_0488 at 490.899 kb on + strand at 490.991 kb on - strand, within Dsui_0488 at 491.078 kb on + strand, within Dsui_0488 at 491.081 kb on - strand, within Dsui_0488 at 491.182 kb on + strand, within Dsui_0488 at 491.259 kb on + strand, within Dsui_0488 at 491.300 kb on - strand, within Dsui_0488 at 491.355 kb on - strand, within Dsui_0488 at 491.357 kb on + strand, within Dsui_0488 at 491.395 kb on + strand at 491.436 kb on + strand at 491.442 kb on - strand at 491.568 kb on + strand at 491.576 kb on - strand at 491.576 kb on - strand at 491.576 kb on - strand at 491.577 kb on - strand at 491.613 kb on - strand at 491.615 kb on + strand at 491.717 kb on - strand, within Dsui_0489 at 492.008 kb on - strand, within Dsui_0489 at 492.108 kb on - strand, within Dsui_0489 at 492.196 kb on + strand at 492.199 kb on - strand, within Dsui_0489 at 492.204 kb on - strand at 492.212 kb on + strand at 492.237 kb on - strand at 492.252 kb on - strand at 492.261 kb on - strand at 492.261 kb on - strand at 492.261 kb on - strand at 492.273 kb on + strand at 492.273 kb on + strand at 492.397 kb on - strand at 492.416 kb on + strand at 492.443 kb on + strand at 492.522 kb on - strand, within Dsui_0490 at 492.527 kb on - strand, within Dsui_0490 at 492.541 kb on - strand, within Dsui_0490 at 492.907 kb on - strand, within Dsui_0490 at 492.927 kb on - strand, within Dsui_0490 at 492.967 kb on + strand, within Dsui_0490 at 492.977 kb on + strand, within Dsui_0490 at 493.086 kb on + strand, within Dsui_0490 at 493.238 kb on + strand, within Dsui_0490
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 490,611 - +0.1 490,715 + Dsui_0488 0.11 -2.2 490,723 - Dsui_0488 0.12 -0.8 490,728 - Dsui_0488 0.13 +0.2 490,738 - Dsui_0488 0.14 -0.3 490,791 - Dsui_0488 0.20 -0.1 490,849 + Dsui_0488 0.27 -1.2 490,899 + +0.4 490,991 - Dsui_0488 0.44 +0.1 491,078 + Dsui_0488 0.54 -2.2 491,081 - Dsui_0488 0.54 -0.7 491,182 + Dsui_0488 0.66 +0.4 491,259 + Dsui_0488 0.75 +0.4 491,300 - Dsui_0488 0.80 +0.4 491,355 - Dsui_0488 0.86 -0.2 491,357 + Dsui_0488 0.86 -1.8 491,395 + -3.2 491,436 + +0.4 491,442 - +0.4 491,568 + +0.4 491,576 - -0.8 491,576 - -1.3 491,576 - -1.4 491,577 - -0.3 491,613 - -1.2 491,615 + -1.2 491,717 - Dsui_0489 0.23 -1.4 492,008 - Dsui_0489 0.63 -0.8 492,108 - Dsui_0489 0.77 -1.0 492,196 + +0.4 492,199 - Dsui_0489 0.90 -1.6 492,204 - -2.3 492,212 + +0.4 492,237 - -1.6 492,252 - -1.0 492,261 - -1.5 492,261 - -1.4 492,261 - -3.4 492,273 + -1.2 492,273 + -2.2 492,397 - +0.4 492,416 + +0.1 492,443 + -0.1 492,522 - Dsui_0490 0.12 -0.6 492,527 - Dsui_0490 0.12 -2.8 492,541 - Dsui_0490 0.13 -2.2 492,907 - Dsui_0490 0.37 -0.6 492,927 - Dsui_0490 0.39 +0.4 492,967 + Dsui_0490 0.41 -1.5 492,977 + Dsui_0490 0.42 +0.2 493,086 + Dsui_0490 0.49 -0.5 493,238 + Dsui_0490 0.59 +0.4
Or see this region's nucleotide sequence