Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0439 and Dsui_0440 are separated by 76 nucleotides Dsui_0440 and Dsui_0441 are separated by 79 nucleotides
Dsui_0439: Dsui_0439 - 2-nitropropane dioxygenase-like enzyme, at 446,049 to 446,996
_0439
Dsui_0440: Dsui_0440 - HDOD domain-containing protein, at 447,073 to 447,930
_0440
Dsui_0441: Dsui_0441 - Mg2+ transporter MgtE, at 448,010 to 449,452
_0441
Position (kb) 447
448 Strain fitness (log2 ratio) -2
-1
0
1 at 446.080 kb on - strand at 446.130 kb on - strand at 446.150 kb on + strand, within Dsui_0439 at 446.201 kb on + strand, within Dsui_0439 at 446.247 kb on + strand, within Dsui_0439 at 446.278 kb on - strand at 446.331 kb on - strand, within Dsui_0439 at 446.362 kb on - strand at 446.372 kb on + strand, within Dsui_0439 at 446.380 kb on - strand, within Dsui_0439 at 446.462 kb on - strand, within Dsui_0439 at 446.679 kb on + strand, within Dsui_0439 at 446.699 kb on - strand, within Dsui_0439 at 446.704 kb on - strand, within Dsui_0439 at 446.972 kb on + strand at 446.972 kb on + strand at 446.998 kb on - strand at 447.027 kb on + strand at 447.027 kb on + strand at 447.035 kb on - strand at 447.134 kb on + strand at 447.142 kb on - strand at 447.142 kb on - strand at 447.151 kb on + strand at 447.156 kb on + strand at 447.225 kb on - strand, within Dsui_0440 at 447.290 kb on - strand, within Dsui_0440 at 447.296 kb on + strand, within Dsui_0440 at 447.304 kb on - strand at 447.309 kb on - strand, within Dsui_0440 at 447.336 kb on - strand, within Dsui_0440 at 447.339 kb on + strand, within Dsui_0440 at 447.386 kb on + strand, within Dsui_0440 at 447.393 kb on - strand, within Dsui_0440 at 447.442 kb on + strand, within Dsui_0440 at 447.475 kb on + strand, within Dsui_0440 at 447.475 kb on + strand, within Dsui_0440 at 447.569 kb on + strand, within Dsui_0440 at 447.788 kb on - strand, within Dsui_0440 at 447.825 kb on + strand, within Dsui_0440 at 447.961 kb on + strand at 448.008 kb on + strand at 448.016 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 446,080 - -1.1 446,130 - -1.1 446,150 + Dsui_0439 0.11 -0.4 446,201 + Dsui_0439 0.16 +0.5 446,247 + Dsui_0439 0.21 -0.1 446,278 - +0.4 446,331 - Dsui_0439 0.30 -1.1 446,362 - +0.4 446,372 + Dsui_0439 0.34 -0.1 446,380 - Dsui_0439 0.35 -1.9 446,462 - Dsui_0439 0.44 -0.6 446,679 + Dsui_0439 0.66 -0.1 446,699 - Dsui_0439 0.69 -1.9 446,704 - Dsui_0439 0.69 -2.4 446,972 + -0.1 446,972 + +1.0 446,998 - +0.4 447,027 + -0.2 447,027 + -0.0 447,035 - +0.4 447,134 + -0.2 447,142 - -1.9 447,142 - -0.6 447,151 + +0.0 447,156 + -0.2 447,225 - Dsui_0440 0.18 -1.6 447,290 - Dsui_0440 0.25 -1.1 447,296 + Dsui_0440 0.26 -0.4 447,304 - +0.4 447,309 - Dsui_0440 0.28 -0.6 447,336 - Dsui_0440 0.31 -0.6 447,339 + Dsui_0440 0.31 +1.0 447,386 + Dsui_0440 0.36 +0.4 447,393 - Dsui_0440 0.37 -2.6 447,442 + Dsui_0440 0.43 +0.3 447,475 + Dsui_0440 0.47 +0.2 447,475 + Dsui_0440 0.47 -0.8 447,569 + Dsui_0440 0.58 +0.1 447,788 - Dsui_0440 0.83 -0.6 447,825 + Dsui_0440 0.88 +0.6 447,961 + +0.4 448,008 + -1.1 448,016 - -0.0
Or see this region's nucleotide sequence