Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0405 and Dsui_0406 are separated by 9 nucleotides Dsui_0406 and Dsui_0407 are separated by 9 nucleotides Dsui_0407 and Dsui_0408 are separated by 65 nucleotides
Dsui_0405: Dsui_0405 - type I secretion outer membrane protein, TolC family, at 403,832 to 405,175
_0405
Dsui_0406: Dsui_0406 - Rhodanese-related sulfurtransferase, at 405,185 to 405,508
_0406
Dsui_0407: Dsui_0407 - protein-L-isoaspartate carboxylmethyltransferase, at 405,518 to 406,183
_0407
Dsui_0408: Dsui_0408 - cation/multidrug efflux pump, at 406,249 to 409,452
_0408
Position (kb) 405
406 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 404.222 kb on - strand, within Dsui_0405 at 404.229 kb on + strand, within Dsui_0405 at 404.342 kb on + strand, within Dsui_0405 at 404.342 kb on + strand, within Dsui_0405 at 404.603 kb on - strand, within Dsui_0405 at 404.623 kb on - strand, within Dsui_0405 at 404.692 kb on - strand, within Dsui_0405 at 404.702 kb on + strand, within Dsui_0405 at 404.759 kb on - strand, within Dsui_0405 at 404.787 kb on - strand, within Dsui_0405 at 404.820 kb on + strand, within Dsui_0405 at 404.864 kb on + strand at 404.875 kb on + strand, within Dsui_0405 at 404.909 kb on - strand, within Dsui_0405 at 404.914 kb on - strand, within Dsui_0405 at 404.959 kb on - strand, within Dsui_0405 at 404.968 kb on - strand, within Dsui_0405 at 404.979 kb on + strand, within Dsui_0405 at 405.003 kb on - strand, within Dsui_0405 at 405.045 kb on - strand at 405.141 kb on + strand at 405.181 kb on + strand at 405.189 kb on - strand at 405.189 kb on - strand at 405.191 kb on - strand at 405.286 kb on - strand, within Dsui_0406 at 405.359 kb on + strand, within Dsui_0406 at 405.367 kb on - strand, within Dsui_0406 at 405.683 kb on - strand, within Dsui_0407 at 406.345 kb on + strand at 406.394 kb on - strand at 406.451 kb on - strand at 406.498 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 404,222 - Dsui_0405 0.29 +2.8 404,229 + Dsui_0405 0.30 +1.5 404,342 + Dsui_0405 0.38 +2.1 404,342 + Dsui_0405 0.38 +2.1 404,603 - Dsui_0405 0.57 +2.5 404,623 - Dsui_0405 0.59 +2.7 404,692 - Dsui_0405 0.64 +2.4 404,702 + Dsui_0405 0.65 +1.5 404,759 - Dsui_0405 0.69 +2.3 404,787 - Dsui_0405 0.71 +2.8 404,820 + Dsui_0405 0.74 +0.5 404,864 + +0.5 404,875 + Dsui_0405 0.78 -1.1 404,909 - Dsui_0405 0.80 +2.6 404,914 - Dsui_0405 0.81 +2.8 404,959 - Dsui_0405 0.84 +2.5 404,968 - Dsui_0405 0.85 +3.0 404,979 + Dsui_0405 0.85 +0.5 405,003 - Dsui_0405 0.87 +3.0 405,045 - +2.8 405,141 + +4.2 405,181 + +0.8 405,189 - +1.1 405,189 - +0.4 405,191 - +2.3 405,286 - Dsui_0406 0.31 +0.9 405,359 + Dsui_0406 0.54 -0.5 405,367 - Dsui_0406 0.56 -0.2 405,683 - Dsui_0407 0.25 +2.6 406,345 + +0.5 406,394 - +2.4 406,451 - +2.2 406,498 + +0.5
Or see this region's nucleotide sequence