Strain Fitness in Dechlorosoma suillum PS around Dsui_0326

Experiment: ALP with Fusidic 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0325 and Dsui_0326 are separated by 102 nucleotidesDsui_0326 and Dsui_0327 are separated by 86 nucleotides Dsui_0325: Dsui_0325 - acetyl-CoA acetyltransferase, at 329,771 to 331,069 _0325 Dsui_0326: Dsui_0326 - acyl-CoA dehydrogenase, at 331,172 to 333,508 _0326 Dsui_0327: Dsui_0327 - transcriptional regulator, at 333,595 to 334,293 _0327 Position (kb) 331 332 333 334Strain fitness (log2 ratio) -2 -1 0 1at 330.307 kb on + strand, within Dsui_0325at 330.314 kb on - strand, within Dsui_0325at 330.371 kb on - strand, within Dsui_0325at 330.429 kb on + strand, within Dsui_0325at 330.437 kb on - strand, within Dsui_0325at 330.437 kb on - strand, within Dsui_0325at 330.512 kb on + strand, within Dsui_0325at 330.535 kb on + strand, within Dsui_0325at 330.546 kb on + strand, within Dsui_0325at 330.546 kb on + strand, within Dsui_0325at 330.581 kb on - strand, within Dsui_0325at 330.616 kb on - strand, within Dsui_0325at 330.664 kb on - strand, within Dsui_0325at 330.664 kb on - strand, within Dsui_0325at 330.695 kb on + strand, within Dsui_0325at 330.735 kb on - strand, within Dsui_0325at 330.759 kb on + strand, within Dsui_0325at 330.760 kb on - strand, within Dsui_0325at 330.786 kb on - strand, within Dsui_0325at 330.874 kb on + strand, within Dsui_0325at 330.876 kb on - strand, within Dsui_0325at 330.890 kb on + strand, within Dsui_0325at 330.898 kb on - strand, within Dsui_0325at 330.943 kb on - strandat 330.985 kb on + strandat 330.985 kb on + strandat 331.009 kb on + strandat 331.058 kb on + strandat 331.126 kb on + strandat 331.207 kb on - strandat 331.207 kb on - strandat 331.379 kb on + strandat 331.389 kb on + strandat 331.449 kb on - strand, within Dsui_0326at 331.669 kb on + strand, within Dsui_0326at 331.702 kb on - strand, within Dsui_0326at 331.717 kb on + strand, within Dsui_0326at 331.752 kb on + strand, within Dsui_0326at 332.011 kb on + strand, within Dsui_0326at 332.017 kb on + strand, within Dsui_0326at 332.110 kb on + strand, within Dsui_0326at 332.199 kb on - strand, within Dsui_0326at 332.491 kb on - strand, within Dsui_0326at 332.584 kb on - strand, within Dsui_0326at 332.603 kb on - strand, within Dsui_0326at 332.614 kb on - strand, within Dsui_0326at 332.647 kb on - strand, within Dsui_0326at 332.684 kb on - strand, within Dsui_0326at 332.733 kb on + strand, within Dsui_0326at 332.734 kb on - strand, within Dsui_0326at 332.766 kb on + strand, within Dsui_0326at 332.766 kb on + strand, within Dsui_0326at 332.766 kb on + strand, within Dsui_0326at 332.774 kb on - strand, within Dsui_0326at 332.774 kb on - strand, within Dsui_0326at 332.790 kb on - strand, within Dsui_0326at 332.822 kb on - strand, within Dsui_0326at 332.838 kb on - strand, within Dsui_0326at 332.899 kb on - strand, within Dsui_0326at 332.900 kb on - strand, within Dsui_0326at 332.906 kb on - strand, within Dsui_0326at 333.027 kb on - strand, within Dsui_0326at 333.056 kb on - strand, within Dsui_0326at 333.102 kb on - strand, within Dsui_0326at 333.157 kb on + strand, within Dsui_0326at 333.196 kb on + strand, within Dsui_0326at 333.216 kb on + strand, within Dsui_0326at 333.274 kb on + strand, within Dsui_0326at 333.275 kb on - strandat 333.285 kb on - strandat 333.425 kb on - strandat 333.467 kb on + strandat 333.475 kb on - strandat 333.488 kb on + strandat 333.496 kb on - strandat 333.566 kb on + strandat 333.820 kb on - strand, within Dsui_0327at 333.820 kb on - strand, within Dsui_0327at 333.820 kb on - strand, within Dsui_0327at 333.826 kb on - strand, within Dsui_0327at 334.120 kb on - strand, within Dsui_0327at 334.209 kb on - strand, within Dsui_0327at 334.239 kb on - strandat 334.241 kb on - strandat 334.281 kb on - strandat 334.300 kb on - strandat 334.391 kb on - strandat 334.391 kb on - strandat 334.391 kb on - strandat 334.391 kb on - strandat 334.391 kb on - strandat 334.430 kb on + strandat 334.454 kb on + strandat 334.484 kb on - strandat 334.500 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
remove
330,307 + Dsui_0325 0.41 -0.5
330,314 - Dsui_0325 0.42 +0.6
330,371 - Dsui_0325 0.46 +0.8
330,429 + Dsui_0325 0.51 -1.1
330,437 - Dsui_0325 0.51 +0.4
330,437 - Dsui_0325 0.51 +0.4
330,512 + Dsui_0325 0.57 -0.5
330,535 + Dsui_0325 0.59 -1.8
330,546 + Dsui_0325 0.60 +0.5
330,546 + Dsui_0325 0.60 +0.5
330,581 - Dsui_0325 0.62 +0.3
330,616 - Dsui_0325 0.65 +0.2
330,664 - Dsui_0325 0.69 +0.3
330,664 - Dsui_0325 0.69 +0.6
330,695 + Dsui_0325 0.71 -0.5
330,735 - Dsui_0325 0.74 +1.2
330,759 + Dsui_0325 0.76 -1.1
330,760 - Dsui_0325 0.76 +0.5
330,786 - Dsui_0325 0.78 +0.6
330,874 + Dsui_0325 0.85 +0.5
330,876 - Dsui_0325 0.85 +0.3
330,890 + Dsui_0325 0.86 -1.8
330,898 - Dsui_0325 0.87 +0.6
330,943 - +0.3
330,985 + -0.5
330,985 + +0.5
331,009 + +0.5
331,058 + -1.5
331,126 + -1.5
331,207 - +0.2
331,207 - +0.0
331,379 + +0.5
331,389 + -1.1
331,449 - Dsui_0326 0.12 +0.8
331,669 + Dsui_0326 0.21 -1.1
331,702 - Dsui_0326 0.23 +0.7
331,717 + Dsui_0326 0.23 +0.5
331,752 + Dsui_0326 0.25 +0.5
332,011 + Dsui_0326 0.36 -0.5
332,017 + Dsui_0326 0.36 -0.5
332,110 + Dsui_0326 0.40 +0.5
332,199 - Dsui_0326 0.44 +1.0
332,491 - Dsui_0326 0.56 +0.4
332,584 - Dsui_0326 0.60 +0.5
332,603 - Dsui_0326 0.61 +0.5
332,614 - Dsui_0326 0.62 +0.3
332,647 - Dsui_0326 0.63 +1.2
332,684 - Dsui_0326 0.65 +0.6
332,733 + Dsui_0326 0.67 -2.1
332,734 - Dsui_0326 0.67 +1.0
332,766 + Dsui_0326 0.68 -0.5
332,766 + Dsui_0326 0.68 -0.5
332,766 + Dsui_0326 0.68 -1.1
332,774 - Dsui_0326 0.69 +0.5
332,774 - Dsui_0326 0.69 +0.4
332,790 - Dsui_0326 0.69 +0.2
332,822 - Dsui_0326 0.71 +1.4
332,838 - Dsui_0326 0.71 -0.0
332,899 - Dsui_0326 0.74 +0.7
332,900 - Dsui_0326 0.74 +0.0
332,906 - Dsui_0326 0.74 +1.5
333,027 - Dsui_0326 0.79 +0.9
333,056 - Dsui_0326 0.81 +0.9
333,102 - Dsui_0326 0.83 +0.6
333,157 + Dsui_0326 0.85 -0.5
333,196 + Dsui_0326 0.87 -0.5
333,216 + Dsui_0326 0.87 -1.1
333,274 + Dsui_0326 0.90 -0.5
333,275 - -0.8
333,285 - +0.2
333,425 - +0.2
333,467 + -1.1
333,475 - +0.0
333,488 + -0.5
333,496 - +0.9
333,566 + +0.5
333,820 - Dsui_0327 0.32 +0.2
333,820 - Dsui_0327 0.32 -0.1
333,820 - Dsui_0327 0.32 +0.1
333,826 - Dsui_0327 0.33 +0.4
334,120 - Dsui_0327 0.75 -0.0
334,209 - Dsui_0327 0.88 +0.2
334,239 - -0.8
334,241 - -0.2
334,281 - -0.3
334,300 - -0.6
334,391 - -1.5
334,391 - -1.1
334,391 - +0.5
334,391 - +0.5
334,391 - -1.8
334,430 + +0.5
334,454 + -0.5
334,484 - -0.5
334,500 + -0.5

Or see this region's nucleotide sequence