Strain Fitness in Dechlorosoma suillum PS around Dsui_0325

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0323 and Dsui_0324 are separated by 9 nucleotidesDsui_0324 and Dsui_0325 are separated by 7 nucleotidesDsui_0325 and Dsui_0326 are separated by 102 nucleotides Dsui_0323: Dsui_0323 - 3-hydroxyacyl-CoA dehydrogenase, at 326,872 to 328,809 _0323 Dsui_0324: Dsui_0324 - EDD domain protein, DegV family, at 328,819 to 329,763 _0324 Dsui_0325: Dsui_0325 - acetyl-CoA acetyltransferase, at 329,771 to 331,069 _0325 Dsui_0326: Dsui_0326 - acyl-CoA dehydrogenase, at 331,172 to 333,508 _0326 Position (kb) 329 330 331 332Strain fitness (log2 ratio) -3 -2 -1 0 1at 329.020 kb on - strand, within Dsui_0324at 329.024 kb on - strand, within Dsui_0324at 329.070 kb on - strand, within Dsui_0324at 329.081 kb on - strand, within Dsui_0324at 329.157 kb on + strand, within Dsui_0324at 329.157 kb on + strand, within Dsui_0324at 329.165 kb on - strand, within Dsui_0324at 329.213 kb on + strand, within Dsui_0324at 329.279 kb on - strand, within Dsui_0324at 329.346 kb on - strand, within Dsui_0324at 329.348 kb on + strand, within Dsui_0324at 329.387 kb on - strand, within Dsui_0324at 329.553 kb on + strandat 329.553 kb on + strand, within Dsui_0324at 329.598 kb on + strand, within Dsui_0324at 329.607 kb on - strand, within Dsui_0324at 329.912 kb on - strand, within Dsui_0325at 329.917 kb on - strand, within Dsui_0325at 329.950 kb on + strand, within Dsui_0325at 329.986 kb on - strand, within Dsui_0325at 329.991 kb on - strand, within Dsui_0325at 330.015 kb on + strand, within Dsui_0325at 330.040 kb on - strand, within Dsui_0325at 330.050 kb on - strand, within Dsui_0325at 330.075 kb on - strand, within Dsui_0325at 330.085 kb on - strand, within Dsui_0325at 330.090 kb on - strand, within Dsui_0325at 330.090 kb on - strand, within Dsui_0325at 330.148 kb on + strand, within Dsui_0325at 330.307 kb on + strand, within Dsui_0325at 330.314 kb on - strand, within Dsui_0325at 330.371 kb on - strand, within Dsui_0325at 330.429 kb on + strand, within Dsui_0325at 330.437 kb on - strand, within Dsui_0325at 330.437 kb on - strand, within Dsui_0325at 330.512 kb on + strand, within Dsui_0325at 330.535 kb on + strand, within Dsui_0325at 330.546 kb on + strand, within Dsui_0325at 330.546 kb on + strand, within Dsui_0325at 330.581 kb on - strand, within Dsui_0325at 330.616 kb on - strand, within Dsui_0325at 330.664 kb on - strand, within Dsui_0325at 330.664 kb on - strand, within Dsui_0325at 330.695 kb on + strand, within Dsui_0325at 330.735 kb on - strand, within Dsui_0325at 330.759 kb on + strand, within Dsui_0325at 330.760 kb on - strand, within Dsui_0325at 330.786 kb on - strand, within Dsui_0325at 330.874 kb on + strand, within Dsui_0325at 330.876 kb on - strand, within Dsui_0325at 330.890 kb on + strand, within Dsui_0325at 330.898 kb on - strand, within Dsui_0325at 330.943 kb on - strandat 330.985 kb on + strandat 330.985 kb on + strandat 331.009 kb on + strandat 331.058 kb on + strandat 331.126 kb on + strandat 331.207 kb on - strandat 331.207 kb on - strandat 331.379 kb on + strandat 331.389 kb on + strandat 331.449 kb on - strand, within Dsui_0326at 331.669 kb on + strand, within Dsui_0326at 331.702 kb on - strand, within Dsui_0326at 331.717 kb on + strand, within Dsui_0326at 331.752 kb on + strand, within Dsui_0326at 332.011 kb on + strand, within Dsui_0326at 332.017 kb on + strand, within Dsui_0326

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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329,020 - Dsui_0324 0.21 +0.8
329,024 - Dsui_0324 0.22 +1.0
329,070 - Dsui_0324 0.27 +0.5
329,081 - Dsui_0324 0.28 -0.0
329,157 + Dsui_0324 0.36 -0.5
329,157 + Dsui_0324 0.36 +0.5
329,165 - Dsui_0324 0.37 +0.5
329,213 + Dsui_0324 0.42 +0.5
329,279 - Dsui_0324 0.49 +0.3
329,346 - Dsui_0324 0.56 -0.1
329,348 + Dsui_0324 0.56 -3.7
329,387 - Dsui_0324 0.60 -0.1
329,553 + -0.5
329,553 + Dsui_0324 0.78 -1.1
329,598 + Dsui_0324 0.82 -1.5
329,607 - Dsui_0324 0.83 +1.3
329,912 - Dsui_0325 0.11 +0.5
329,917 - Dsui_0325 0.11 +0.6
329,950 + Dsui_0325 0.14 +0.5
329,986 - Dsui_0325 0.17 +0.3
329,991 - Dsui_0325 0.17 +0.5
330,015 + Dsui_0325 0.19 -0.5
330,040 - Dsui_0325 0.21 +0.4
330,050 - Dsui_0325 0.21 +0.7
330,075 - Dsui_0325 0.23 +0.9
330,085 - Dsui_0325 0.24 +1.4
330,090 - Dsui_0325 0.25 +1.3
330,090 - Dsui_0325 0.25 +1.6
330,148 + Dsui_0325 0.29 +0.5
330,307 + Dsui_0325 0.41 -0.5
330,314 - Dsui_0325 0.42 +0.6
330,371 - Dsui_0325 0.46 +0.8
330,429 + Dsui_0325 0.51 -1.1
330,437 - Dsui_0325 0.51 +0.4
330,437 - Dsui_0325 0.51 +0.4
330,512 + Dsui_0325 0.57 -0.5
330,535 + Dsui_0325 0.59 -1.8
330,546 + Dsui_0325 0.60 +0.5
330,546 + Dsui_0325 0.60 +0.5
330,581 - Dsui_0325 0.62 +0.3
330,616 - Dsui_0325 0.65 +0.2
330,664 - Dsui_0325 0.69 +0.3
330,664 - Dsui_0325 0.69 +0.6
330,695 + Dsui_0325 0.71 -0.5
330,735 - Dsui_0325 0.74 +1.2
330,759 + Dsui_0325 0.76 -1.1
330,760 - Dsui_0325 0.76 +0.5
330,786 - Dsui_0325 0.78 +0.6
330,874 + Dsui_0325 0.85 +0.5
330,876 - Dsui_0325 0.85 +0.3
330,890 + Dsui_0325 0.86 -1.8
330,898 - Dsui_0325 0.87 +0.6
330,943 - +0.3
330,985 + -0.5
330,985 + +0.5
331,009 + +0.5
331,058 + -1.5
331,126 + -1.5
331,207 - +0.2
331,207 - +0.0
331,379 + +0.5
331,389 + -1.1
331,449 - Dsui_0326 0.12 +0.8
331,669 + Dsui_0326 0.21 -1.1
331,702 - Dsui_0326 0.23 +0.7
331,717 + Dsui_0326 0.23 +0.5
331,752 + Dsui_0326 0.25 +0.5
332,011 + Dsui_0326 0.36 -0.5
332,017 + Dsui_0326 0.36 -0.5

Or see this region's nucleotide sequence