Strain Fitness in Dechlorosoma suillum PS around Dsui_0320

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0319 and Dsui_0320 are separated by 261 nucleotidesDsui_0320 and Dsui_0321 are separated by 161 nucleotides Dsui_0319: Dsui_0319 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 322,045 to 323,688 _0319 Dsui_0320: Dsui_0320 - DNA-binding domain-containing protein, AraC-type, at 323,950 to 324,957 _0320 Dsui_0321: Dsui_0321 - long-chain fatty acid transport protein, at 325,119 to 326,417 _0321 Position (kb) 323 324 325Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 322.964 kb on + strandat 322.969 kb on + strandat 322.977 kb on - strand, within Dsui_0319at 323.044 kb on + strand, within Dsui_0319at 323.044 kb on + strand, within Dsui_0319at 323.049 kb on + strandat 323.052 kb on - strand, within Dsui_0319at 323.057 kb on - strand, within Dsui_0319at 323.057 kb on - strand, within Dsui_0319at 323.061 kb on + strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.277 kb on - strand, within Dsui_0319at 323.339 kb on + strand, within Dsui_0319at 323.352 kb on - strand, within Dsui_0319at 323.363 kb on - strand, within Dsui_0319at 323.412 kb on - strand, within Dsui_0319at 323.469 kb on - strand, within Dsui_0319at 323.517 kb on - strand, within Dsui_0319at 323.517 kb on - strand, within Dsui_0319at 323.517 kb on - strand, within Dsui_0319at 323.522 kb on - strand, within Dsui_0319at 323.565 kb on - strandat 323.650 kb on - strandat 323.655 kb on - strandat 323.660 kb on + strandat 323.690 kb on + strandat 323.717 kb on - strandat 323.791 kb on + strandat 323.954 kb on - strandat 324.111 kb on - strand, within Dsui_0320at 324.178 kb on + strand, within Dsui_0320at 324.206 kb on + strand, within Dsui_0320at 324.214 kb on - strand, within Dsui_0320at 324.214 kb on - strand, within Dsui_0320at 324.214 kb on - strand, within Dsui_0320at 324.214 kb on - strand, within Dsui_0320at 324.231 kb on + strand, within Dsui_0320at 324.231 kb on + strand, within Dsui_0320at 324.241 kb on + strand, within Dsui_0320at 324.249 kb on - strand, within Dsui_0320at 324.249 kb on - strand, within Dsui_0320at 324.258 kb on - strand, within Dsui_0320at 324.373 kb on - strand, within Dsui_0320at 324.383 kb on + strand, within Dsui_0320at 324.396 kb on - strand, within Dsui_0320at 324.407 kb on + strand, within Dsui_0320at 324.436 kb on - strand, within Dsui_0320at 324.475 kb on + strand, within Dsui_0320at 324.497 kb on + strand, within Dsui_0320at 324.610 kb on + strand, within Dsui_0320at 324.627 kb on + strand, within Dsui_0320at 324.656 kb on + strand, within Dsui_0320at 324.684 kb on - strand, within Dsui_0320at 324.704 kb on - strand, within Dsui_0320at 324.741 kb on + strand, within Dsui_0320at 324.750 kb on + strand, within Dsui_0320at 324.754 kb on - strand, within Dsui_0320at 324.779 kb on - strand, within Dsui_0320at 324.787 kb on - strand, within Dsui_0320at 324.866 kb on - strandat 324.868 kb on + strandat 324.871 kb on - strandat 324.924 kb on + strandat 325.062 kb on - strandat 325.125 kb on - strandat 325.144 kb on + strandat 325.159 kb on - strandat 325.204 kb on + strandat 325.217 kb on - strandat 325.236 kb on - strandat 325.239 kb on + strandat 325.246 kb on - strandat 325.288 kb on - strand, within Dsui_0321at 325.289 kb on + strand, within Dsui_0321at 325.292 kb on + strand, within Dsui_0321at 325.297 kb on + strand, within Dsui_0321at 325.308 kb on - strand, within Dsui_0321at 325.336 kb on - strand, within Dsui_0321at 325.456 kb on + strand, within Dsui_0321at 325.499 kb on + strandat 325.499 kb on + strand, within Dsui_0321at 325.508 kb on + strand, within Dsui_0321at 325.570 kb on - strand, within Dsui_0321at 325.581 kb on - strand, within Dsui_0321at 325.596 kb on - strand, within Dsui_0321at 325.603 kb on + strand, within Dsui_0321at 325.700 kb on - strand, within Dsui_0321at 325.714 kb on - strand, within Dsui_0321at 325.778 kb on + strand, within Dsui_0321at 325.859 kb on - strand, within Dsui_0321at 325.898 kb on - strand, within Dsui_0321at 325.917 kb on - strand, within Dsui_0321at 325.950 kb on - strand, within Dsui_0321

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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322,964 + +0.5
322,969 + +0.5
322,977 - Dsui_0319 0.57 -1.8
323,044 + Dsui_0319 0.61 +0.5
323,044 + Dsui_0319 0.61 +0.5
323,049 + +1.5
323,052 - Dsui_0319 0.61 -1.5
323,057 - Dsui_0319 0.62 -1.1
323,057 - Dsui_0319 0.62 +0.5
323,061 + Dsui_0319 0.62 -2.1
323,113 - Dsui_0319 0.65 -2.1
323,113 - Dsui_0319 0.65 -1.1
323,113 - Dsui_0319 0.65 -3.7
323,113 - Dsui_0319 0.65 +0.5
323,113 - Dsui_0319 0.65 -0.5
323,113 - Dsui_0319 0.65 -2.8
323,113 - Dsui_0319 0.65 -2.3
323,113 - Dsui_0319 0.65 +0.5
323,113 - Dsui_0319 0.65 +0.5
323,277 - Dsui_0319 0.75 -1.1
323,339 + Dsui_0319 0.79 +0.5
323,352 - Dsui_0319 0.80 -0.5
323,363 - Dsui_0319 0.80 -1.8
323,412 - Dsui_0319 0.83 +0.5
323,469 - Dsui_0319 0.87 +0.5
323,517 - Dsui_0319 0.90 +0.5
323,517 - Dsui_0319 0.90 +0.5
323,517 - Dsui_0319 0.90 -0.5
323,522 - Dsui_0319 0.90 +0.5
323,565 - +0.5
323,650 - +0.5
323,655 - -1.8
323,660 + +0.5
323,690 + +0.5
323,717 - -3.7
323,791 + -1.8
323,954 - -2.7
324,111 - Dsui_0320 0.16 +0.5
324,178 + Dsui_0320 0.23 -0.4
324,206 + Dsui_0320 0.25 +0.4
324,214 - Dsui_0320 0.26 +0.5
324,214 - Dsui_0320 0.26 -0.4
324,214 - Dsui_0320 0.26 -1.8
324,214 - Dsui_0320 0.26 +0.5
324,231 + Dsui_0320 0.28 -0.5
324,231 + Dsui_0320 0.28 -0.4
324,241 + Dsui_0320 0.29 -0.2
324,249 - Dsui_0320 0.30 +0.5
324,249 - Dsui_0320 0.30 -1.5
324,258 - Dsui_0320 0.31 -0.5
324,373 - Dsui_0320 0.42 -2.1
324,383 + Dsui_0320 0.43 -0.7
324,396 - Dsui_0320 0.44 -1.8
324,407 + Dsui_0320 0.45 -0.1
324,436 - Dsui_0320 0.48 -0.8
324,475 + Dsui_0320 0.52 -0.6
324,497 + Dsui_0320 0.54 -0.4
324,610 + Dsui_0320 0.65 -0.2
324,627 + Dsui_0320 0.67 -0.6
324,656 + Dsui_0320 0.70 -0.3
324,684 - Dsui_0320 0.73 -0.5
324,704 - Dsui_0320 0.75 +0.2
324,741 + Dsui_0320 0.78 -0.2
324,750 + Dsui_0320 0.79 -0.2
324,754 - Dsui_0320 0.80 -1.5
324,779 - Dsui_0320 0.82 -1.1
324,787 - Dsui_0320 0.83 -1.5
324,866 - +2.1
324,868 + +0.5
324,871 - +1.0
324,924 + +0.3
325,062 - +0.5
325,125 - +1.0
325,144 + -1.1
325,159 - -1.1
325,204 + -0.5
325,217 - +0.0
325,236 - -2.2
325,239 + -1.1
325,246 - -0.1
325,288 - Dsui_0321 0.13 +0.5
325,289 + Dsui_0321 0.13 -0.8
325,292 + Dsui_0321 0.13 -0.5
325,297 + Dsui_0321 0.14 +0.5
325,308 - Dsui_0321 0.15 -1.2
325,336 - Dsui_0321 0.17 -0.1
325,456 + Dsui_0321 0.26 -2.3
325,499 + +0.5
325,499 + Dsui_0321 0.29 +0.5
325,508 + Dsui_0321 0.30 +0.5
325,570 - Dsui_0321 0.35 +0.8
325,581 - Dsui_0321 0.36 -0.3
325,596 - Dsui_0321 0.37 -0.5
325,603 + Dsui_0321 0.37 -1.8
325,700 - Dsui_0321 0.45 -0.4
325,714 - Dsui_0321 0.46 +0.7
325,778 + Dsui_0321 0.51 -1.8
325,859 - Dsui_0321 0.57 -0.1
325,898 - Dsui_0321 0.60 -0.1
325,917 - Dsui_0321 0.61 -0.4
325,950 - Dsui_0321 0.64 -0.3

Or see this region's nucleotide sequence