Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0292 and Dsui_0293 are separated by 61 nucleotides Dsui_0293 and Dsui_0294 are separated by 70 nucleotides Dsui_0294 and Dsui_0295 are separated by 19 nucleotides
Dsui_0292: Dsui_0292 - putative signal transduction protein containing EAL and modified HD-GYP domains, at 291,307 to 292,698
_0292
Dsui_0293: Dsui_0293 - PilZ domain-containing protein, at 292,760 to 293,338
_0293
Dsui_0294: Dsui_0294 - D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family, at 293,409 to 294,920
_0294
Dsui_0295: Dsui_0295 - hypothetical protein, at 294,940 to 297,729
_0295
Position (kb) 293
294
295 Strain fitness (log2 ratio) -2
-1
0
1
2 at 292.470 kb on + strand at 292.912 kb on + strand at 292.929 kb on - strand, within Dsui_0293 at 292.965 kb on - strand, within Dsui_0293 at 292.966 kb on - strand, within Dsui_0293 at 293.014 kb on + strand, within Dsui_0293 at 293.144 kb on + strand, within Dsui_0293 at 293.209 kb on - strand, within Dsui_0293 at 293.251 kb on - strand, within Dsui_0293 at 293.269 kb on - strand, within Dsui_0293 at 293.343 kb on + strand at 293.519 kb on + strand at 293.591 kb on - strand, within Dsui_0294 at 293.633 kb on + strand, within Dsui_0294 at 293.687 kb on + strand, within Dsui_0294 at 293.711 kb on + strand at 293.826 kb on - strand, within Dsui_0294 at 293.833 kb on + strand, within Dsui_0294 at 293.868 kb on - strand, within Dsui_0294 at 293.900 kb on + strand, within Dsui_0294 at 293.974 kb on + strand at 294.021 kb on + strand, within Dsui_0294 at 294.043 kb on + strand at 294.053 kb on + strand, within Dsui_0294 at 294.200 kb on - strand at 294.268 kb on - strand, within Dsui_0294 at 294.324 kb on + strand, within Dsui_0294 at 294.332 kb on - strand at 294.339 kb on + strand, within Dsui_0294 at 294.512 kb on + strand, within Dsui_0294 at 294.514 kb on + strand, within Dsui_0294 at 294.557 kb on + strand, within Dsui_0294 at 294.577 kb on - strand, within Dsui_0294 at 294.599 kb on + strand, within Dsui_0294 at 294.619 kb on + strand, within Dsui_0294 at 294.719 kb on + strand, within Dsui_0294 at 294.727 kb on - strand at 295.053 kb on + strand at 295.079 kb on + strand at 295.112 kb on + strand at 295.120 kb on - strand at 295.122 kb on + strand at 295.144 kb on - strand at 295.154 kb on - strand at 295.177 kb on + strand at 295.190 kb on + strand at 295.201 kb on + strand at 295.209 kb on - strand at 295.309 kb on + strand at 295.345 kb on + strand, within Dsui_0295 at 295.350 kb on + strand, within Dsui_0295 at 295.381 kb on - strand at 295.418 kb on - strand at 295.455 kb on - strand at 295.472 kb on - strand, within Dsui_0295 at 295.472 kb on - strand, within Dsui_0295 at 295.581 kb on - strand at 295.731 kb on + strand at 295.739 kb on - strand, within Dsui_0295 at 295.776 kb on + strand, within Dsui_0295 at 295.826 kb on - strand at 295.869 kb on - strand, within Dsui_0295 at 295.885 kb on + strand, within Dsui_0295 at 295.913 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 292,470 + -1.5 292,912 + +0.5 292,929 - Dsui_0293 0.29 -0.1 292,965 - Dsui_0293 0.35 +0.2 292,966 - Dsui_0293 0.36 +0.1 293,014 + Dsui_0293 0.44 -0.5 293,144 + Dsui_0293 0.66 +0.5 293,209 - Dsui_0293 0.78 -0.0 293,251 - Dsui_0293 0.85 +0.3 293,269 - Dsui_0293 0.88 -0.4 293,343 + -1.8 293,519 + +1.5 293,591 - Dsui_0294 0.12 +0.5 293,633 + Dsui_0294 0.15 -1.1 293,687 + Dsui_0294 0.18 -0.5 293,711 + -0.5 293,826 - Dsui_0294 0.28 -1.5 293,833 + Dsui_0294 0.28 -0.4 293,868 - Dsui_0294 0.30 -1.1 293,900 + Dsui_0294 0.32 -1.1 293,974 + +0.5 294,021 + Dsui_0294 0.40 +2.1 294,043 + -0.5 294,053 + Dsui_0294 0.43 +0.5 294,200 - -0.5 294,268 - Dsui_0294 0.57 -2.1 294,324 + Dsui_0294 0.61 +0.5 294,332 - -0.5 294,339 + Dsui_0294 0.62 -0.1 294,512 + Dsui_0294 0.73 -0.8 294,514 + Dsui_0294 0.73 -0.9 294,557 + Dsui_0294 0.76 -0.1 294,577 - Dsui_0294 0.77 +0.5 294,599 + Dsui_0294 0.79 -1.8 294,619 + Dsui_0294 0.80 -1.2 294,719 + Dsui_0294 0.87 -1.8 294,727 - +0.5 295,053 + -2.5 295,079 + -1.5 295,112 + -1.8 295,120 - -1.1 295,122 + +0.5 295,144 - +0.5 295,154 - +0.5 295,177 + +0.5 295,190 + -1.8 295,201 + +0.5 295,209 - -0.5 295,309 + -0.5 295,345 + Dsui_0295 0.15 -0.5 295,350 + Dsui_0295 0.15 -0.5 295,381 - +0.5 295,418 - -0.5 295,455 - +0.5 295,472 - Dsui_0295 0.19 -1.5 295,472 - Dsui_0295 0.19 -2.1 295,581 - -0.5 295,731 + -0.5 295,739 - Dsui_0295 0.29 +0.5 295,776 + Dsui_0295 0.30 +0.6 295,826 - +0.5 295,869 - Dsui_0295 0.33 -0.5 295,885 + Dsui_0295 0.34 -0.5 295,913 - +0.5
Or see this region's nucleotide sequence