Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0105 and Dsui_0106 are separated by 252 nucleotides Dsui_0106 and Dsui_0107 are separated by 149 nucleotides
Dsui_0105: Dsui_0105 - NAD-dependent aldehyde dehydrogenase, at 103,031 to 104,461
_0105
Dsui_0106: Dsui_0106 - hypothetical protein, at 104,714 to 105,490
_0106
Dsui_0107: Dsui_0107 - PDZ domain-containing protein, at 105,640 to 106,716
_0107
Position (kb)
104
105
106 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 103.726 kb on + strand at 103.726 kb on + strand, within Dsui_0105 at 103.734 kb on - strand at 103.734 kb on - strand, within Dsui_0105 at 103.734 kb on - strand, within Dsui_0105 at 103.785 kb on + strand, within Dsui_0105 at 103.829 kb on + strand at 103.830 kb on + strand at 103.926 kb on - strand, within Dsui_0105 at 104.029 kb on - strand at 104.042 kb on - strand, within Dsui_0105 at 104.072 kb on + strand, within Dsui_0105 at 104.073 kb on - strand, within Dsui_0105 at 104.149 kb on - strand, within Dsui_0105 at 104.211 kb on + strand at 104.227 kb on + strand at 104.463 kb on + strand at 104.494 kb on + strand at 104.502 kb on - strand at 104.513 kb on + strand at 104.551 kb on - strand at 104.553 kb on + strand at 104.696 kb on + strand at 104.715 kb on - strand at 104.715 kb on - strand at 104.744 kb on - strand at 104.955 kb on - strand, within Dsui_0106 at 104.965 kb on + strand, within Dsui_0106 at 104.984 kb on + strand at 104.997 kb on - strand, within Dsui_0106 at 105.068 kb on + strand, within Dsui_0106 at 105.076 kb on + strand at 105.113 kb on - strand, within Dsui_0106 at 105.202 kb on + strand, within Dsui_0106 at 105.210 kb on - strand at 105.210 kb on - strand, within Dsui_0106 at 105.275 kb on - strand, within Dsui_0106 at 105.458 kb on - strand at 105.467 kb on + strand at 105.564 kb on - strand at 105.712 kb on + strand at 105.713 kb on - strand at 105.720 kb on - strand at 105.720 kb on - strand at 105.771 kb on - strand at 105.830 kb on + strand, within Dsui_0107 at 105.830 kb on + strand at 105.832 kb on + strand, within Dsui_0107 at 105.832 kb on + strand, within Dsui_0107 at 105.838 kb on - strand at 105.838 kb on - strand at 105.861 kb on + strand, within Dsui_0107 at 105.863 kb on + strand, within Dsui_0107 at 105.889 kb on + strand, within Dsui_0107 at 105.942 kb on + strand, within Dsui_0107 at 105.942 kb on - strand at 105.944 kb on + strand at 105.949 kb on + strand, within Dsui_0107 at 105.949 kb on - strand, within Dsui_0107 at 106.032 kb on - strand, within Dsui_0107 at 106.059 kb on + strand, within Dsui_0107 at 106.073 kb on + strand at 106.096 kb on - strand at 106.126 kb on - strand, within Dsui_0107 at 106.129 kb on + strand, within Dsui_0107 at 106.161 kb on + strand, within Dsui_0107 at 106.169 kb on - strand, within Dsui_0107 at 106.169 kb on - strand, within Dsui_0107 at 106.172 kb on + strand, within Dsui_0107 at 106.274 kb on + strand at 106.294 kb on - strand at 106.294 kb on - strand, within Dsui_0107 at 106.327 kb on - strand at 106.332 kb on - strand at 106.351 kb on + strand at 106.352 kb on + strand, within Dsui_0107 at 106.354 kb on + strand, within Dsui_0107 at 106.357 kb on - strand, within Dsui_0107 at 106.357 kb on - strand at 106.397 kb on + strand, within Dsui_0107 at 106.397 kb on + strand, within Dsui_0107 at 106.397 kb on + strand at 106.405 kb on - strand, within Dsui_0107 at 106.405 kb on - strand, within Dsui_0107 at 106.410 kb on - strand, within Dsui_0107 at 106.452 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 103,726 + +0.8 103,726 + Dsui_0105 0.49 -0.8 103,734 - -0.2 103,734 - Dsui_0105 0.49 -2.7 103,734 - Dsui_0105 0.49 -1.5 103,785 + Dsui_0105 0.53 -2.4 103,829 + -0.2 103,830 + -0.2 103,926 - Dsui_0105 0.63 -2.1 104,029 - +0.8 104,042 - Dsui_0105 0.71 +0.8 104,072 + Dsui_0105 0.73 -0.8 104,073 - Dsui_0105 0.73 -0.8 104,149 - Dsui_0105 0.78 -1.7 104,211 + +0.8 104,227 + -0.2 104,463 + -0.2 104,494 + +0.8 104,502 - -0.8 104,513 + +0.8 104,551 - +0.8 104,553 + +0.8 104,696 + -0.8 104,715 - +0.0 104,715 - -0.8 104,744 - +0.8 104,955 - Dsui_0106 0.31 -0.2 104,965 + Dsui_0106 0.32 -1.5 104,984 + -1.2 104,997 - Dsui_0106 0.36 -1.8 105,068 + Dsui_0106 0.46 -0.2 105,076 + +0.8 105,113 - Dsui_0106 0.51 -0.8 105,202 + Dsui_0106 0.63 -2.4 105,210 - +3.6 105,210 - Dsui_0106 0.64 -1.2 105,275 - Dsui_0106 0.72 -0.8 105,458 - -2.1 105,467 + +0.8 105,564 - -0.2 105,712 + +0.8 105,713 - +0.8 105,720 - -0.2 105,720 - +0.8 105,771 - +0.8 105,830 + Dsui_0107 0.18 -1.8 105,830 + +0.8 105,832 + Dsui_0107 0.18 +0.8 105,832 + Dsui_0107 0.18 -1.2 105,838 - -0.8 105,838 - +0.8 105,861 + Dsui_0107 0.21 -0.2 105,863 + Dsui_0107 0.21 -0.2 105,889 + Dsui_0107 0.23 +0.8 105,942 + Dsui_0107 0.28 -0.8 105,942 - -0.2 105,944 + +0.8 105,949 + Dsui_0107 0.29 -1.5 105,949 - Dsui_0107 0.29 -0.8 106,032 - Dsui_0107 0.36 -0.2 106,059 + Dsui_0107 0.39 -0.2 106,073 + +0.8 106,096 - +0.8 106,126 - Dsui_0107 0.45 -0.8 106,129 + Dsui_0107 0.45 -0.2 106,161 + Dsui_0107 0.48 -0.2 106,169 - Dsui_0107 0.49 +0.8 106,169 - Dsui_0107 0.49 -0.2 106,172 + Dsui_0107 0.49 -0.8 106,274 + -0.2 106,294 - -1.2 106,294 - Dsui_0107 0.61 -0.2 106,327 - +0.8 106,332 - +0.8 106,351 + +0.8 106,352 + Dsui_0107 0.66 -0.2 106,354 + Dsui_0107 0.66 -1.8 106,357 - Dsui_0107 0.67 -1.5 106,357 - +0.8 106,397 + Dsui_0107 0.70 +0.8 106,397 + Dsui_0107 0.70 -3.0 106,397 + -0.2 106,405 - Dsui_0107 0.71 -1.5 106,405 - Dsui_0107 0.71 -0.8 106,410 - Dsui_0107 0.71 -0.2 106,452 - +0.8
Or see this region's nucleotide sequence