Strain Fitness in Dechlorosoma suillum PS around Dsui_0096

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0095 and Dsui_0096 are separated by 267 nucleotidesDsui_0096 and Dsui_0097 are separated by 119 nucleotidesDsui_0097 and Dsui_0098 are separated by 88 nucleotidesDsui_0098 and Dsui_0099 are separated by 3 nucleotides Dsui_0095: Dsui_0095 - indolepyruvate ferredoxin oxidreductase, alpha/beta subunit, at 93,240 to 95,105 _0095 Dsui_0096: Dsui_0096 - methyl-accepting chemotaxis protein, at 95,373 to 97,190 _0096 Dsui_0097: Dsui_0097 - putative metal-binding protein, at 97,310 to 97,750 _0097 Dsui_0098: Dsui_0098 - Uncharacterized protein family UPF0057, at 97,839 to 98,033 _0098 Dsui_0099: Dsui_0099 - putative periplasmic or secreted lipoprotein, at 98,037 to 98,696 _0099 Position (kb) 95 96 97 98Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 94.577 kb on - strand, within Dsui_0095at 94.618 kb on - strand, within Dsui_0095at 94.640 kb on + strand, within Dsui_0095at 94.648 kb on - strand, within Dsui_0095at 94.648 kb on - strand, within Dsui_0095at 94.670 kb on - strand, within Dsui_0095at 94.680 kb on - strand, within Dsui_0095at 94.753 kb on - strand, within Dsui_0095at 94.757 kb on + strandat 94.816 kb on - strand, within Dsui_0095at 94.939 kb on + strandat 94.939 kb on + strandat 94.939 kb on + strandat 94.939 kb on + strandat 94.939 kb on + strandat 94.939 kb on + strandat 94.939 kb on + strandat 94.939 kb on + strandat 94.946 kb on + strandat 94.946 kb on + strandat 94.946 kb on + strandat 94.947 kb on - strandat 94.947 kb on - strandat 94.947 kb on - strandat 94.947 kb on - strandat 94.947 kb on - strandat 94.947 kb on - strandat 94.947 kb on - strandat 94.947 kb on - strandat 94.954 kb on - strandat 94.954 kb on - strandat 94.954 kb on - strandat 94.954 kb on - strandat 94.954 kb on - strandat 94.954 kb on - strandat 95.014 kb on - strandat 95.020 kb on - strandat 95.073 kb on + strandat 95.073 kb on + strandat 95.073 kb on + strandat 95.078 kb on + strandat 95.081 kb on - strandat 95.081 kb on - strandat 95.081 kb on - strandat 95.153 kb on - strandat 95.198 kb on + strandat 95.200 kb on + strandat 95.219 kb on - strandat 95.255 kb on - strandat 95.289 kb on - strandat 95.353 kb on + strandat 95.357 kb on + strandat 95.383 kb on - strandat 95.390 kb on + strandat 95.456 kb on - strandat 95.485 kb on + strandat 95.490 kb on + strandat 95.498 kb on - strandat 95.500 kb on - strandat 95.522 kb on + strandat 95.530 kb on - strandat 95.571 kb on - strand, within Dsui_0096at 95.571 kb on - strand, within Dsui_0096at 95.571 kb on - strandat 95.571 kb on - strand, within Dsui_0096at 95.571 kb on - strand, within Dsui_0096at 95.592 kb on + strand, within Dsui_0096at 95.609 kb on + strand, within Dsui_0096at 95.623 kb on + strand, within Dsui_0096at 95.623 kb on + strand, within Dsui_0096at 95.623 kb on + strand, within Dsui_0096at 95.623 kb on + strand, within Dsui_0096at 95.655 kb on + strand, within Dsui_0096at 95.685 kb on - strand, within Dsui_0096at 95.707 kb on - strand, within Dsui_0096at 95.713 kb on + strand, within Dsui_0096at 95.741 kb on + strand, within Dsui_0096at 95.754 kb on - strand, within Dsui_0096at 95.762 kb on - strand, within Dsui_0096at 96.034 kb on + strand, within Dsui_0096at 96.054 kb on + strand, within Dsui_0096at 96.074 kb on - strandat 96.086 kb on + strand, within Dsui_0096at 96.094 kb on - strandat 96.129 kb on + strand, within Dsui_0096at 96.149 kb on + strand, within Dsui_0096at 96.346 kb on - strand, within Dsui_0096at 96.389 kb on + strand, within Dsui_0096at 96.402 kb on - strand, within Dsui_0096at 96.443 kb on + strand, within Dsui_0096at 96.613 kb on + strand, within Dsui_0096at 96.613 kb on + strand, within Dsui_0096at 96.613 kb on + strand, within Dsui_0096at 96.621 kb on - strand, within Dsui_0096at 96.621 kb on - strandat 96.621 kb on - strand, within Dsui_0096at 96.701 kb on - strand, within Dsui_0096at 96.745 kb on + strand, within Dsui_0096at 96.814 kb on + strand, within Dsui_0096at 96.826 kb on + strand, within Dsui_0096at 96.838 kb on + strand, within Dsui_0096at 96.838 kb on + strand, within Dsui_0096at 96.843 kb on + strand, within Dsui_0096at 96.846 kb on - strand, within Dsui_0096at 96.846 kb on - strand, within Dsui_0096at 96.951 kb on - strand, within Dsui_0096at 97.029 kb on + strandat 97.032 kb on - strandat 97.057 kb on - strandat 97.057 kb on - strandat 97.072 kb on + strandat 97.249 kb on + strandat 97.381 kb on - strand, within Dsui_0097at 97.442 kb on - strandat 97.444 kb on + strand, within Dsui_0097at 97.473 kb on + strand, within Dsui_0097at 97.473 kb on + strand, within Dsui_0097at 97.478 kb on + strand, within Dsui_0097at 97.535 kb on - strand, within Dsui_0097at 97.535 kb on - strand, within Dsui_0097at 97.535 kb on - strand, within Dsui_0097at 97.540 kb on - strand, within Dsui_0097at 97.576 kb on - strand, within Dsui_0097at 97.618 kb on + strand, within Dsui_0097at 97.626 kb on - strand, within Dsui_0097at 97.687 kb on - strandat 97.709 kb on - strandat 97.739 kb on + strandat 97.744 kb on + strandat 97.744 kb on + strandat 97.744 kb on + strandat 97.744 kb on + strandat 97.752 kb on - strandat 98.004 kb on + strand, within Dsui_0098at 98.066 kb on + strandat 98.066 kb on + strandat 98.098 kb on + strandat 98.106 kb on - strand, within Dsui_0099at 98.158 kb on - strand, within Dsui_0099

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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94,577 - Dsui_0095 0.72 +0.8
94,618 - Dsui_0095 0.74 -2.7
94,640 + Dsui_0095 0.75 -1.2
94,648 - Dsui_0095 0.75 -1.2
94,648 - Dsui_0095 0.75 -0.2
94,670 - Dsui_0095 0.77 -0.8
94,680 - Dsui_0095 0.77 +0.8
94,753 - Dsui_0095 0.81 +0.8
94,757 + +0.8
94,816 - Dsui_0095 0.84 +0.8
94,939 + -0.4
94,939 + +0.8
94,939 + +0.0
94,939 + -0.1
94,939 + -0.8
94,939 + +0.2
94,939 + +1.8
94,939 + -0.5
94,946 + +0.8
94,946 + +0.6
94,946 + -0.1
94,947 - -1.8
94,947 - -1.5
94,947 - -0.2
94,947 - +0.8
94,947 - -1.8
94,947 - +0.8
94,947 - -0.2
94,947 - +0.8
94,954 - +0.8
94,954 - +0.8
94,954 - -0.8
94,954 - -1.5
94,954 - +0.8
94,954 - -2.0
95,014 - +0.8
95,020 - -0.2
95,073 + -2.3
95,073 + +1.1
95,073 + -0.8
95,078 + +0.5
95,081 - +0.8
95,081 - -0.2
95,081 - -0.8
95,153 - +0.8
95,198 + +0.1
95,200 + +0.1
95,219 - +0.8
95,255 - +0.8
95,289 - -1.5
95,353 + +0.1
95,357 + +0.2
95,383 - +0.8
95,390 + +0.1
95,456 - -0.2
95,485 + +0.3
95,490 + +0.2
95,498 - -0.2
95,500 - +0.8
95,522 + -0.0
95,530 - -0.2
95,571 - Dsui_0096 0.11 -2.0
95,571 - Dsui_0096 0.11 -0.8
95,571 - +0.8
95,571 - Dsui_0096 0.11 -0.8
95,571 - Dsui_0096 0.11 +0.8
95,592 + Dsui_0096 0.12 +0.2
95,609 + Dsui_0096 0.13 +1.0
95,623 + Dsui_0096 0.14 +0.1
95,623 + Dsui_0096 0.14 -0.1
95,623 + Dsui_0096 0.14 +0.8
95,623 + Dsui_0096 0.14 +0.1
95,655 + Dsui_0096 0.16 +0.5
95,685 - Dsui_0096 0.17 -2.4
95,707 - Dsui_0096 0.18 -0.8
95,713 + Dsui_0096 0.19 -0.2
95,741 + Dsui_0096 0.20 +0.3
95,754 - Dsui_0096 0.21 +0.8
95,762 - Dsui_0096 0.21 -0.8
96,034 + Dsui_0096 0.36 +0.8
96,054 + Dsui_0096 0.37 +0.2
96,074 - +0.8
96,086 + Dsui_0096 0.39 +0.1
96,094 - +0.8
96,129 + Dsui_0096 0.42 -0.1
96,149 + Dsui_0096 0.43 +1.2
96,346 - Dsui_0096 0.54 +0.8
96,389 + Dsui_0096 0.56 +0.0
96,402 - Dsui_0096 0.57 -0.2
96,443 + Dsui_0096 0.59 +0.4
96,613 + Dsui_0096 0.68 +0.5
96,613 + Dsui_0096 0.68 +0.4
96,613 + Dsui_0096 0.68 -1.0
96,621 - Dsui_0096 0.69 -0.2
96,621 - +0.8
96,621 - Dsui_0096 0.69 +0.8
96,701 - Dsui_0096 0.73 -1.5
96,745 + Dsui_0096 0.75 -0.2
96,814 + Dsui_0096 0.79 -1.3
96,826 + Dsui_0096 0.80 +0.3
96,838 + Dsui_0096 0.81 +0.3
96,838 + Dsui_0096 0.81 +0.3
96,843 + Dsui_0096 0.81 +0.7
96,846 - Dsui_0096 0.81 +0.8
96,846 - Dsui_0096 0.81 -0.8
96,951 - Dsui_0096 0.87 +0.8
97,029 + +0.6
97,032 - -0.4
97,057 - -1.5
97,057 - -0.8
97,072 + +0.4
97,249 + +0.3
97,381 - Dsui_0097 0.16 -0.2
97,442 - +0.8
97,444 + Dsui_0097 0.30 +0.2
97,473 + Dsui_0097 0.37 +0.4
97,473 + Dsui_0097 0.37 -0.8
97,478 + Dsui_0097 0.38 +0.4
97,535 - Dsui_0097 0.51 -1.2
97,535 - Dsui_0097 0.51 -0.4
97,535 - Dsui_0097 0.51 -1.4
97,540 - Dsui_0097 0.52 -0.1
97,576 - Dsui_0097 0.60 +0.8
97,618 + Dsui_0097 0.70 +0.0
97,626 - Dsui_0097 0.72 -0.8
97,687 - +0.8
97,709 - +0.8
97,739 + +0.1
97,744 + +0.0
97,744 + -0.1
97,744 + +0.3
97,744 + -0.1
97,752 - +1.2
98,004 + Dsui_0098 0.85 -0.2
98,066 + +0.8
98,066 + +0.8
98,098 + -1.2
98,106 - Dsui_0099 0.10 -0.3
98,158 - Dsui_0099 0.18 -3.0

Or see this region's nucleotide sequence