Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0095 and Dsui_0096 are separated by 267 nucleotides Dsui_0096 and Dsui_0097 are separated by 119 nucleotides Dsui_0097 and Dsui_0098 are separated by 88 nucleotides Dsui_0098 and Dsui_0099 are separated by 3 nucleotides
Dsui_0095: Dsui_0095 - indolepyruvate ferredoxin oxidreductase, alpha/beta subunit, at 93,240 to 95,105
_0095
Dsui_0096: Dsui_0096 - methyl-accepting chemotaxis protein, at 95,373 to 97,190
_0096
Dsui_0097: Dsui_0097 - putative metal-binding protein, at 97,310 to 97,750
_0097
Dsui_0098: Dsui_0098 - Uncharacterized protein family UPF0057, at 97,839 to 98,033
_0098
Dsui_0099: Dsui_0099 - putative periplasmic or secreted lipoprotein, at 98,037 to 98,696
_0099
Position (kb)
95
96
97
98 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 94.577 kb on - strand, within Dsui_0095 at 94.618 kb on - strand, within Dsui_0095 at 94.640 kb on + strand, within Dsui_0095 at 94.648 kb on - strand, within Dsui_0095 at 94.648 kb on - strand, within Dsui_0095 at 94.670 kb on - strand, within Dsui_0095 at 94.680 kb on - strand, within Dsui_0095 at 94.753 kb on - strand, within Dsui_0095 at 94.757 kb on + strand at 94.816 kb on - strand, within Dsui_0095 at 94.939 kb on + strand at 94.939 kb on + strand at 94.939 kb on + strand at 94.939 kb on + strand at 94.939 kb on + strand at 94.939 kb on + strand at 94.939 kb on + strand at 94.939 kb on + strand at 94.946 kb on + strand at 94.946 kb on + strand at 94.946 kb on + strand at 94.947 kb on - strand at 94.947 kb on - strand at 94.947 kb on - strand at 94.947 kb on - strand at 94.947 kb on - strand at 94.947 kb on - strand at 94.947 kb on - strand at 94.947 kb on - strand at 94.954 kb on - strand at 94.954 kb on - strand at 94.954 kb on - strand at 94.954 kb on - strand at 94.954 kb on - strand at 94.954 kb on - strand at 95.014 kb on - strand at 95.020 kb on - strand at 95.073 kb on + strand at 95.073 kb on + strand at 95.073 kb on + strand at 95.078 kb on + strand at 95.081 kb on - strand at 95.081 kb on - strand at 95.081 kb on - strand at 95.153 kb on - strand at 95.198 kb on + strand at 95.200 kb on + strand at 95.219 kb on - strand at 95.255 kb on - strand at 95.289 kb on - strand at 95.353 kb on + strand at 95.357 kb on + strand at 95.383 kb on - strand at 95.390 kb on + strand at 95.456 kb on - strand at 95.485 kb on + strand at 95.490 kb on + strand at 95.498 kb on - strand at 95.500 kb on - strand at 95.522 kb on + strand at 95.530 kb on - strand at 95.571 kb on - strand, within Dsui_0096 at 95.571 kb on - strand, within Dsui_0096 at 95.571 kb on - strand at 95.571 kb on - strand, within Dsui_0096 at 95.571 kb on - strand, within Dsui_0096 at 95.592 kb on + strand, within Dsui_0096 at 95.609 kb on + strand, within Dsui_0096 at 95.623 kb on + strand, within Dsui_0096 at 95.623 kb on + strand, within Dsui_0096 at 95.623 kb on + strand, within Dsui_0096 at 95.623 kb on + strand, within Dsui_0096 at 95.655 kb on + strand, within Dsui_0096 at 95.685 kb on - strand, within Dsui_0096 at 95.707 kb on - strand, within Dsui_0096 at 95.713 kb on + strand, within Dsui_0096 at 95.741 kb on + strand, within Dsui_0096 at 95.754 kb on - strand, within Dsui_0096 at 95.762 kb on - strand, within Dsui_0096 at 96.034 kb on + strand, within Dsui_0096 at 96.054 kb on + strand, within Dsui_0096 at 96.074 kb on - strand at 96.086 kb on + strand, within Dsui_0096 at 96.094 kb on - strand at 96.129 kb on + strand, within Dsui_0096 at 96.149 kb on + strand, within Dsui_0096 at 96.346 kb on - strand, within Dsui_0096 at 96.389 kb on + strand, within Dsui_0096 at 96.402 kb on - strand, within Dsui_0096 at 96.443 kb on + strand, within Dsui_0096 at 96.613 kb on + strand, within Dsui_0096 at 96.613 kb on + strand, within Dsui_0096 at 96.613 kb on + strand, within Dsui_0096 at 96.621 kb on - strand, within Dsui_0096 at 96.621 kb on - strand at 96.621 kb on - strand, within Dsui_0096 at 96.701 kb on - strand, within Dsui_0096 at 96.745 kb on + strand, within Dsui_0096 at 96.814 kb on + strand, within Dsui_0096 at 96.826 kb on + strand, within Dsui_0096 at 96.838 kb on + strand, within Dsui_0096 at 96.838 kb on + strand, within Dsui_0096 at 96.843 kb on + strand, within Dsui_0096 at 96.846 kb on - strand, within Dsui_0096 at 96.846 kb on - strand, within Dsui_0096 at 96.951 kb on - strand, within Dsui_0096 at 97.029 kb on + strand at 97.032 kb on - strand at 97.057 kb on - strand at 97.057 kb on - strand at 97.072 kb on + strand at 97.249 kb on + strand at 97.381 kb on - strand, within Dsui_0097 at 97.442 kb on - strand at 97.444 kb on + strand, within Dsui_0097 at 97.473 kb on + strand, within Dsui_0097 at 97.473 kb on + strand, within Dsui_0097 at 97.478 kb on + strand, within Dsui_0097 at 97.535 kb on - strand, within Dsui_0097 at 97.535 kb on - strand, within Dsui_0097 at 97.535 kb on - strand, within Dsui_0097 at 97.540 kb on - strand, within Dsui_0097 at 97.576 kb on - strand, within Dsui_0097 at 97.618 kb on + strand, within Dsui_0097 at 97.626 kb on - strand, within Dsui_0097 at 97.687 kb on - strand at 97.709 kb on - strand at 97.739 kb on + strand at 97.744 kb on + strand at 97.744 kb on + strand at 97.744 kb on + strand at 97.744 kb on + strand at 97.752 kb on - strand at 98.004 kb on + strand, within Dsui_0098 at 98.066 kb on + strand at 98.066 kb on + strand at 98.098 kb on + strand at 98.106 kb on - strand, within Dsui_0099 at 98.158 kb on - strand, within Dsui_0099
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 94,577 - Dsui_0095 0.72 +0.8 94,618 - Dsui_0095 0.74 -2.7 94,640 + Dsui_0095 0.75 -1.2 94,648 - Dsui_0095 0.75 -1.2 94,648 - Dsui_0095 0.75 -0.2 94,670 - Dsui_0095 0.77 -0.8 94,680 - Dsui_0095 0.77 +0.8 94,753 - Dsui_0095 0.81 +0.8 94,757 + +0.8 94,816 - Dsui_0095 0.84 +0.8 94,939 + -0.4 94,939 + +0.8 94,939 + +0.0 94,939 + -0.1 94,939 + -0.8 94,939 + +0.2 94,939 + +1.8 94,939 + -0.5 94,946 + +0.8 94,946 + +0.6 94,946 + -0.1 94,947 - -1.8 94,947 - -1.5 94,947 - -0.2 94,947 - +0.8 94,947 - -1.8 94,947 - +0.8 94,947 - -0.2 94,947 - +0.8 94,954 - +0.8 94,954 - +0.8 94,954 - -0.8 94,954 - -1.5 94,954 - +0.8 94,954 - -2.0 95,014 - +0.8 95,020 - -0.2 95,073 + -2.3 95,073 + +1.1 95,073 + -0.8 95,078 + +0.5 95,081 - +0.8 95,081 - -0.2 95,081 - -0.8 95,153 - +0.8 95,198 + +0.1 95,200 + +0.1 95,219 - +0.8 95,255 - +0.8 95,289 - -1.5 95,353 + +0.1 95,357 + +0.2 95,383 - +0.8 95,390 + +0.1 95,456 - -0.2 95,485 + +0.3 95,490 + +0.2 95,498 - -0.2 95,500 - +0.8 95,522 + -0.0 95,530 - -0.2 95,571 - Dsui_0096 0.11 -2.0 95,571 - Dsui_0096 0.11 -0.8 95,571 - +0.8 95,571 - Dsui_0096 0.11 -0.8 95,571 - Dsui_0096 0.11 +0.8 95,592 + Dsui_0096 0.12 +0.2 95,609 + Dsui_0096 0.13 +1.0 95,623 + Dsui_0096 0.14 +0.1 95,623 + Dsui_0096 0.14 -0.1 95,623 + Dsui_0096 0.14 +0.8 95,623 + Dsui_0096 0.14 +0.1 95,655 + Dsui_0096 0.16 +0.5 95,685 - Dsui_0096 0.17 -2.4 95,707 - Dsui_0096 0.18 -0.8 95,713 + Dsui_0096 0.19 -0.2 95,741 + Dsui_0096 0.20 +0.3 95,754 - Dsui_0096 0.21 +0.8 95,762 - Dsui_0096 0.21 -0.8 96,034 + Dsui_0096 0.36 +0.8 96,054 + Dsui_0096 0.37 +0.2 96,074 - +0.8 96,086 + Dsui_0096 0.39 +0.1 96,094 - +0.8 96,129 + Dsui_0096 0.42 -0.1 96,149 + Dsui_0096 0.43 +1.2 96,346 - Dsui_0096 0.54 +0.8 96,389 + Dsui_0096 0.56 +0.0 96,402 - Dsui_0096 0.57 -0.2 96,443 + Dsui_0096 0.59 +0.4 96,613 + Dsui_0096 0.68 +0.5 96,613 + Dsui_0096 0.68 +0.4 96,613 + Dsui_0096 0.68 -1.0 96,621 - Dsui_0096 0.69 -0.2 96,621 - +0.8 96,621 - Dsui_0096 0.69 +0.8 96,701 - Dsui_0096 0.73 -1.5 96,745 + Dsui_0096 0.75 -0.2 96,814 + Dsui_0096 0.79 -1.3 96,826 + Dsui_0096 0.80 +0.3 96,838 + Dsui_0096 0.81 +0.3 96,838 + Dsui_0096 0.81 +0.3 96,843 + Dsui_0096 0.81 +0.7 96,846 - Dsui_0096 0.81 +0.8 96,846 - Dsui_0096 0.81 -0.8 96,951 - Dsui_0096 0.87 +0.8 97,029 + +0.6 97,032 - -0.4 97,057 - -1.5 97,057 - -0.8 97,072 + +0.4 97,249 + +0.3 97,381 - Dsui_0097 0.16 -0.2 97,442 - +0.8 97,444 + Dsui_0097 0.30 +0.2 97,473 + Dsui_0097 0.37 +0.4 97,473 + Dsui_0097 0.37 -0.8 97,478 + Dsui_0097 0.38 +0.4 97,535 - Dsui_0097 0.51 -1.2 97,535 - Dsui_0097 0.51 -0.4 97,535 - Dsui_0097 0.51 -1.4 97,540 - Dsui_0097 0.52 -0.1 97,576 - Dsui_0097 0.60 +0.8 97,618 + Dsui_0097 0.70 +0.0 97,626 - Dsui_0097 0.72 -0.8 97,687 - +0.8 97,709 - +0.8 97,739 + +0.1 97,744 + +0.0 97,744 + -0.1 97,744 + +0.3 97,744 + -0.1 97,752 - +1.2 98,004 + Dsui_0098 0.85 -0.2 98,066 + +0.8 98,066 + +0.8 98,098 + -1.2 98,106 - Dsui_0099 0.10 -0.3 98,158 - Dsui_0099 0.18 -3.0
Or see this region's nucleotide sequence