Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0058 and Dsui_0059 overlap by 62 nucleotides Dsui_0059 and Dsui_0060 are separated by 3 nucleotides Dsui_0060 and Dsui_0061 overlap by 4 nucleotides
Dsui_0058: Dsui_0058 - Glycosyl transferase family 11, at 55,496 to 56,431
_0058
Dsui_0059: Dsui_0059 - glycosyl transferase, at 56,370 to 57,104
_0059
Dsui_0060: Dsui_0060 - GDP-D-mannose dehydratase, at 57,108 to 58,082
_0060
Dsui_0061: Dsui_0061 - glycosyltransferase, at 58,079 to 59,182
_0061
Position (kb)
57
58
59 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 56.149 kb on - strand, within Dsui_0058 at 56.159 kb on + strand, within Dsui_0058 at 56.193 kb on - strand, within Dsui_0058 at 56.250 kb on - strand, within Dsui_0058 at 56.367 kb on + strand at 56.386 kb on - strand at 56.391 kb on + strand at 56.426 kb on - strand at 56.464 kb on + strand, within Dsui_0059 at 56.677 kb on - strand, within Dsui_0059 at 56.787 kb on - strand, within Dsui_0059 at 56.860 kb on + strand, within Dsui_0059 at 56.860 kb on + strand, within Dsui_0059 at 56.860 kb on + strand, within Dsui_0059 at 56.865 kb on + strand, within Dsui_0059 at 56.865 kb on + strand, within Dsui_0059 at 56.868 kb on - strand, within Dsui_0059 at 56.868 kb on - strand, within Dsui_0059 at 56.871 kb on + strand, within Dsui_0059 at 56.873 kb on - strand, within Dsui_0059 at 56.957 kb on + strand, within Dsui_0059 at 57.007 kb on - strand, within Dsui_0059 at 57.021 kb on + strand, within Dsui_0059 at 57.041 kb on - strand at 57.106 kb on + strand at 57.119 kb on - strand at 57.132 kb on - strand at 57.137 kb on - strand at 57.139 kb on + strand at 57.147 kb on - strand at 57.147 kb on - strand at 57.183 kb on - strand at 57.275 kb on - strand, within Dsui_0060 at 57.283 kb on - strand, within Dsui_0060 at 57.297 kb on - strand, within Dsui_0060 at 57.331 kb on + strand, within Dsui_0060 at 57.420 kb on + strand, within Dsui_0060 at 57.486 kb on + strand, within Dsui_0060 at 57.539 kb on - strand, within Dsui_0060 at 57.584 kb on + strand, within Dsui_0060 at 57.590 kb on - strand, within Dsui_0060 at 57.592 kb on - strand, within Dsui_0060 at 57.681 kb on + strand, within Dsui_0060 at 57.762 kb on - strand, within Dsui_0060 at 57.764 kb on + strand, within Dsui_0060 at 57.764 kb on + strand, within Dsui_0060 at 57.772 kb on - strand, within Dsui_0060 at 57.816 kb on + strand, within Dsui_0060 at 57.829 kb on - strand, within Dsui_0060 at 57.831 kb on + strand, within Dsui_0060 at 57.831 kb on + strand, within Dsui_0060 at 57.838 kb on - strand, within Dsui_0060 at 57.863 kb on + strand, within Dsui_0060 at 57.863 kb on + strand, within Dsui_0060 at 57.882 kb on + strand, within Dsui_0060 at 57.888 kb on - strand, within Dsui_0060 at 57.903 kb on + strand, within Dsui_0060 at 57.994 kb on + strand at 57.994 kb on + strand at 58.003 kb on + strand at 58.023 kb on - strand at 58.046 kb on - strand at 58.087 kb on + strand at 58.128 kb on + strand at 58.138 kb on + strand at 58.148 kb on + strand at 58.148 kb on + strand at 58.215 kb on + strand, within Dsui_0061 at 58.276 kb on + strand, within Dsui_0061 at 58.320 kb on + strand, within Dsui_0061 at 58.333 kb on - strand, within Dsui_0061 at 58.352 kb on - strand, within Dsui_0061 at 58.359 kb on + strand, within Dsui_0061 at 58.421 kb on - strand, within Dsui_0061 at 58.421 kb on - strand, within Dsui_0061 at 58.515 kb on - strand, within Dsui_0061 at 58.585 kb on + strand, within Dsui_0061 at 58.632 kb on - strand, within Dsui_0061 at 58.662 kb on - strand, within Dsui_0061 at 58.672 kb on + strand, within Dsui_0061 at 58.674 kb on + strand, within Dsui_0061 at 58.680 kb on + strand, within Dsui_0061 at 58.687 kb on - strand, within Dsui_0061 at 58.688 kb on - strand, within Dsui_0061 at 58.693 kb on - strand, within Dsui_0061 at 58.706 kb on - strand, within Dsui_0061 at 58.709 kb on + strand, within Dsui_0061 at 58.709 kb on + strand, within Dsui_0061 at 58.773 kb on + strand, within Dsui_0061 at 58.773 kb on + strand, within Dsui_0061 at 58.818 kb on - strand, within Dsui_0061 at 58.823 kb on - strand, within Dsui_0061 at 58.843 kb on - strand, within Dsui_0061 at 58.889 kb on + strand, within Dsui_0061 at 58.908 kb on + strand, within Dsui_0061 at 58.914 kb on + strand, within Dsui_0061 at 58.914 kb on + strand, within Dsui_0061 at 58.922 kb on - strand, within Dsui_0061 at 58.922 kb on - strand, within Dsui_0061 at 58.922 kb on - strand, within Dsui_0061 at 58.929 kb on + strand, within Dsui_0061 at 58.937 kb on - strand, within Dsui_0061 at 58.941 kb on + strand, within Dsui_0061 at 58.941 kb on + strand, within Dsui_0061 at 58.949 kb on - strand, within Dsui_0061 at 58.949 kb on - strand, within Dsui_0061 at 58.958 kb on + strand, within Dsui_0061 at 58.989 kb on + strand, within Dsui_0061 at 58.994 kb on + strand, within Dsui_0061 at 59.025 kb on - strand, within Dsui_0061 at 59.057 kb on - strand, within Dsui_0061 at 59.057 kb on - strand, within Dsui_0061 at 59.074 kb on - strand at 59.076 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 56,149 - Dsui_0058 0.70 -1.4 56,159 + Dsui_0058 0.71 -0.2 56,193 - Dsui_0058 0.74 -3.4 56,250 - Dsui_0058 0.81 -4.0 56,367 + -1.8 56,386 - -1.1 56,391 + +0.8 56,426 - -3.2 56,464 + Dsui_0059 0.13 +0.8 56,677 - Dsui_0059 0.42 -2.8 56,787 - Dsui_0059 0.57 -1.2 56,860 + Dsui_0059 0.67 -1.2 56,860 + Dsui_0059 0.67 -0.2 56,860 + Dsui_0059 0.67 +0.8 56,865 + Dsui_0059 0.67 -1.5 56,865 + Dsui_0059 0.67 +0.8 56,868 - Dsui_0059 0.68 -3.1 56,868 - Dsui_0059 0.68 -3.5 56,871 + Dsui_0059 0.68 +0.8 56,873 - Dsui_0059 0.68 -5.9 56,957 + Dsui_0059 0.80 -1.5 57,007 - Dsui_0059 0.87 -4.4 57,021 + Dsui_0059 0.89 +0.8 57,041 - -2.7 57,106 + -1.5 57,119 - -2.2 57,132 - +0.2 57,137 - -3.6 57,139 + -1.5 57,147 - -0.1 57,147 - +0.6 57,183 - -2.8 57,275 - Dsui_0060 0.17 -3.6 57,283 - Dsui_0060 0.18 -2.2 57,297 - Dsui_0060 0.19 -2.1 57,331 + Dsui_0060 0.23 +0.8 57,420 + Dsui_0060 0.32 -0.2 57,486 + Dsui_0060 0.39 -0.8 57,539 - Dsui_0060 0.44 -3.1 57,584 + Dsui_0060 0.49 -0.2 57,590 - Dsui_0060 0.49 -2.6 57,592 - Dsui_0060 0.50 -3.0 57,681 + Dsui_0060 0.59 -0.8 57,762 - Dsui_0060 0.67 -3.1 57,764 + Dsui_0060 0.67 +0.8 57,764 + Dsui_0060 0.67 -0.2 57,772 - Dsui_0060 0.68 -2.7 57,816 + Dsui_0060 0.73 +0.8 57,829 - Dsui_0060 0.74 -3.3 57,831 + Dsui_0060 0.74 +0.8 57,831 + Dsui_0060 0.74 -1.5 57,838 - Dsui_0060 0.75 -2.7 57,863 + Dsui_0060 0.77 -0.2 57,863 + Dsui_0060 0.77 -0.8 57,882 + Dsui_0060 0.79 -0.2 57,888 - Dsui_0060 0.80 -3.0 57,903 + Dsui_0060 0.82 +0.8 57,994 + +0.8 57,994 + +0.8 58,003 + -1.5 58,023 - -3.0 58,046 - -3.6 58,087 + -0.2 58,128 + -2.2 58,138 + -0.8 58,148 + -1.2 58,148 + +0.8 58,215 + Dsui_0061 0.12 +0.8 58,276 + Dsui_0061 0.18 -1.2 58,320 + Dsui_0061 0.22 -1.8 58,333 - Dsui_0061 0.23 -3.0 58,352 - Dsui_0061 0.25 -3.0 58,359 + Dsui_0061 0.25 +0.8 58,421 - Dsui_0061 0.31 -2.8 58,421 - Dsui_0061 0.31 -2.8 58,515 - Dsui_0061 0.39 -3.3 58,585 + Dsui_0061 0.46 -0.8 58,632 - Dsui_0061 0.50 -1.0 58,662 - Dsui_0061 0.53 -3.0 58,672 + Dsui_0061 0.54 -1.5 58,674 + Dsui_0061 0.54 -1.8 58,680 + Dsui_0061 0.54 -0.8 58,687 - Dsui_0061 0.55 -2.4 58,688 - Dsui_0061 0.55 -2.8 58,693 - Dsui_0061 0.56 -3.3 58,706 - Dsui_0061 0.57 -4.4 58,709 + Dsui_0061 0.57 -0.8 58,709 + Dsui_0061 0.57 -1.5 58,773 + Dsui_0061 0.63 +0.8 58,773 + Dsui_0061 0.63 -0.2 58,818 - Dsui_0061 0.67 -3.3 58,823 - Dsui_0061 0.67 -5.9 58,843 - Dsui_0061 0.69 -3.1 58,889 + Dsui_0061 0.73 +0.8 58,908 + Dsui_0061 0.75 -0.2 58,914 + Dsui_0061 0.76 +0.8 58,914 + Dsui_0061 0.76 +0.8 58,922 - Dsui_0061 0.76 -3.2 58,922 - Dsui_0061 0.76 -3.8 58,922 - Dsui_0061 0.76 -3.6 58,929 + Dsui_0061 0.77 +0.8 58,937 - Dsui_0061 0.78 -3.7 58,941 + Dsui_0061 0.78 -3.5 58,941 + Dsui_0061 0.78 +0.8 58,949 - Dsui_0061 0.79 -2.8 58,949 - Dsui_0061 0.79 -3.1 58,958 + Dsui_0061 0.80 +0.8 58,989 + Dsui_0061 0.82 -0.8 58,994 + Dsui_0061 0.83 +0.8 59,025 - Dsui_0061 0.86 -2.3 59,057 - Dsui_0061 0.89 -3.1 59,057 - Dsui_0061 0.89 -2.9 59,074 - -3.1 59,076 - -2.6
Or see this region's nucleotide sequence