Strain Fitness in Dechlorosoma suillum PS around Dsui_0058

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0057 and Dsui_0058 are separated by 7 nucleotidesDsui_0058 and Dsui_0059 overlap by 62 nucleotidesDsui_0059 and Dsui_0060 are separated by 3 nucleotides Dsui_0057: Dsui_0057 - glycosyltransferase, at 54,298 to 55,488 _0057 Dsui_0058: Dsui_0058 - Glycosyl transferase family 11, at 55,496 to 56,431 _0058 Dsui_0059: Dsui_0059 - glycosyl transferase, at 56,370 to 57,104 _0059 Dsui_0060: Dsui_0060 - GDP-D-mannose dehydratase, at 57,108 to 58,082 _0060 Position (kb) 55 56 57Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 54.557 kb on + strand, within Dsui_0057at 54.585 kb on + strand, within Dsui_0057at 54.845 kb on - strand, within Dsui_0057at 54.848 kb on - strand, within Dsui_0057at 54.873 kb on + strand, within Dsui_0057at 54.873 kb on + strand, within Dsui_0057at 54.881 kb on - strand, within Dsui_0057at 54.910 kb on - strand, within Dsui_0057at 54.961 kb on - strand, within Dsui_0057at 55.089 kb on - strand, within Dsui_0057at 55.227 kb on + strand, within Dsui_0057at 55.235 kb on - strand, within Dsui_0057at 55.262 kb on - strand, within Dsui_0057at 55.384 kb on - strandat 55.394 kb on - strandat 55.397 kb on + strandat 55.405 kb on - strandat 55.438 kb on - strandat 55.455 kb on - strandat 55.455 kb on - strandat 55.461 kb on + strandat 55.483 kb on + strandat 55.702 kb on + strand, within Dsui_0058at 55.727 kb on + strand, within Dsui_0058at 55.784 kb on + strand, within Dsui_0058at 55.792 kb on - strand, within Dsui_0058at 55.833 kb on + strand, within Dsui_0058at 55.856 kb on + strand, within Dsui_0058at 55.897 kb on - strand, within Dsui_0058at 55.935 kb on + strand, within Dsui_0058at 55.947 kb on - strand, within Dsui_0058at 55.964 kb on - strand, within Dsui_0058at 56.149 kb on - strand, within Dsui_0058at 56.159 kb on + strand, within Dsui_0058at 56.193 kb on - strand, within Dsui_0058at 56.250 kb on - strand, within Dsui_0058at 56.367 kb on + strandat 56.386 kb on - strandat 56.391 kb on + strandat 56.426 kb on - strandat 56.464 kb on + strand, within Dsui_0059at 56.677 kb on - strand, within Dsui_0059at 56.787 kb on - strand, within Dsui_0059at 56.860 kb on + strand, within Dsui_0059at 56.860 kb on + strand, within Dsui_0059at 56.860 kb on + strand, within Dsui_0059at 56.865 kb on + strand, within Dsui_0059at 56.865 kb on + strand, within Dsui_0059at 56.868 kb on - strand, within Dsui_0059at 56.868 kb on - strand, within Dsui_0059at 56.871 kb on + strand, within Dsui_0059at 56.873 kb on - strand, within Dsui_0059at 56.957 kb on + strand, within Dsui_0059at 57.007 kb on - strand, within Dsui_0059at 57.021 kb on + strand, within Dsui_0059at 57.041 kb on - strandat 57.106 kb on + strandat 57.119 kb on - strandat 57.132 kb on - strandat 57.137 kb on - strandat 57.139 kb on + strandat 57.147 kb on - strandat 57.147 kb on - strandat 57.183 kb on - strandat 57.275 kb on - strand, within Dsui_0060at 57.283 kb on - strand, within Dsui_0060at 57.297 kb on - strand, within Dsui_0060at 57.331 kb on + strand, within Dsui_0060at 57.420 kb on + strand, within Dsui_0060

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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54,557 + Dsui_0057 0.22 -0.8
54,585 + Dsui_0057 0.24 -1.2
54,845 - Dsui_0057 0.46 -1.5
54,848 - Dsui_0057 0.46 -3.1
54,873 + Dsui_0057 0.48 -0.2
54,873 + Dsui_0057 0.48 -0.8
54,881 - Dsui_0057 0.49 -1.7
54,910 - Dsui_0057 0.51 -1.8
54,961 - Dsui_0057 0.56 -3.2
55,089 - Dsui_0057 0.66 -3.0
55,227 + Dsui_0057 0.78 -0.2
55,235 - Dsui_0057 0.79 -3.9
55,262 - Dsui_0057 0.81 -2.0
55,384 - -2.8
55,394 - -3.2
55,397 + -1.5
55,405 - -2.8
55,438 - -0.9
55,455 - -3.0
55,455 - -3.0
55,461 + +0.8
55,483 + -0.2
55,702 + Dsui_0058 0.22 +0.8
55,727 + Dsui_0058 0.25 -3.0
55,784 + Dsui_0058 0.31 -1.2
55,792 - Dsui_0058 0.32 -3.8
55,833 + Dsui_0058 0.36 +0.8
55,856 + Dsui_0058 0.38 -0.2
55,897 - Dsui_0058 0.43 -3.4
55,935 + Dsui_0058 0.47 -0.2
55,947 - Dsui_0058 0.48 -3.1
55,964 - Dsui_0058 0.50 -2.7
56,149 - Dsui_0058 0.70 -1.4
56,159 + Dsui_0058 0.71 -0.2
56,193 - Dsui_0058 0.74 -3.4
56,250 - Dsui_0058 0.81 -4.0
56,367 + -1.8
56,386 - -1.1
56,391 + +0.8
56,426 - -3.2
56,464 + Dsui_0059 0.13 +0.8
56,677 - Dsui_0059 0.42 -2.8
56,787 - Dsui_0059 0.57 -1.2
56,860 + Dsui_0059 0.67 -1.2
56,860 + Dsui_0059 0.67 -0.2
56,860 + Dsui_0059 0.67 +0.8
56,865 + Dsui_0059 0.67 -1.5
56,865 + Dsui_0059 0.67 +0.8
56,868 - Dsui_0059 0.68 -3.1
56,868 - Dsui_0059 0.68 -3.5
56,871 + Dsui_0059 0.68 +0.8
56,873 - Dsui_0059 0.68 -5.9
56,957 + Dsui_0059 0.80 -1.5
57,007 - Dsui_0059 0.87 -4.4
57,021 + Dsui_0059 0.89 +0.8
57,041 - -2.7
57,106 + -1.5
57,119 - -2.2
57,132 - +0.2
57,137 - -3.6
57,139 + -1.5
57,147 - -0.1
57,147 - +0.6
57,183 - -2.8
57,275 - Dsui_0060 0.17 -3.6
57,283 - Dsui_0060 0.18 -2.2
57,297 - Dsui_0060 0.19 -2.1
57,331 + Dsui_0060 0.23 +0.8
57,420 + Dsui_0060 0.32 -0.2

Or see this region's nucleotide sequence