Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0055 and Dsui_0056 overlap by 14 nucleotides Dsui_0056 and Dsui_0057 overlap by 4 nucleotides
Dsui_0055: Dsui_0055 - glycosyltransferase, at 52,198 to 53,385
_0055
Dsui_0056: Dsui_0056 - glycosyl transferase, at 53,372 to 54,301
_0056
Dsui_0057: Dsui_0057 - glycosyltransferase, at 54,298 to 55,488
_0057
Position (kb) 53
54
55 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 52.399 kb on - strand, within Dsui_0055 at 52.578 kb on - strand, within Dsui_0055 at 52.583 kb on - strand, within Dsui_0055 at 52.607 kb on + strand, within Dsui_0055 at 52.685 kb on + strand, within Dsui_0055 at 52.826 kb on - strand, within Dsui_0055 at 52.865 kb on + strand, within Dsui_0055 at 52.870 kb on + strand at 52.958 kb on + strand at 52.966 kb on - strand, within Dsui_0055 at 52.994 kb on + strand, within Dsui_0055 at 52.994 kb on + strand at 52.994 kb on + strand, within Dsui_0055 at 53.002 kb on - strand, within Dsui_0055 at 53.160 kb on + strand at 53.173 kb on - strand, within Dsui_0055 at 53.214 kb on - strand, within Dsui_0055 at 53.223 kb on + strand, within Dsui_0055 at 53.250 kb on + strand, within Dsui_0055 at 53.296 kb on - strand at 53.499 kb on - strand, within Dsui_0056 at 53.557 kb on - strand, within Dsui_0056 at 53.593 kb on - strand, within Dsui_0056 at 53.637 kb on - strand, within Dsui_0056 at 53.650 kb on + strand at 53.712 kb on - strand, within Dsui_0056 at 53.770 kb on - strand, within Dsui_0056 at 53.790 kb on + strand, within Dsui_0056 at 53.829 kb on + strand, within Dsui_0056 at 53.952 kb on - strand, within Dsui_0056 at 54.093 kb on - strand, within Dsui_0056 at 54.093 kb on - strand, within Dsui_0056 at 54.279 kb on + strand at 54.340 kb on - strand at 54.430 kb on + strand, within Dsui_0057 at 54.430 kb on + strand, within Dsui_0057 at 54.430 kb on + strand, within Dsui_0057 at 54.457 kb on - strand, within Dsui_0057 at 54.557 kb on + strand, within Dsui_0057 at 54.585 kb on + strand, within Dsui_0057 at 54.845 kb on - strand, within Dsui_0057 at 54.848 kb on - strand, within Dsui_0057 at 54.873 kb on + strand, within Dsui_0057 at 54.873 kb on + strand, within Dsui_0057 at 54.881 kb on - strand, within Dsui_0057 at 54.910 kb on - strand, within Dsui_0057 at 54.961 kb on - strand, within Dsui_0057 at 55.089 kb on - strand, within Dsui_0057 at 55.227 kb on + strand, within Dsui_0057 at 55.235 kb on - strand, within Dsui_0057 at 55.262 kb on - strand, within Dsui_0057
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 52,399 - Dsui_0055 0.17 -2.8 52,578 - Dsui_0055 0.32 -2.2 52,583 - Dsui_0055 0.32 -2.6 52,607 + Dsui_0055 0.34 -1.5 52,685 + Dsui_0055 0.41 -0.2 52,826 - Dsui_0055 0.53 -1.7 52,865 + Dsui_0055 0.56 +0.8 52,870 + +0.8 52,958 + +0.8 52,966 - Dsui_0055 0.65 -2.1 52,994 + Dsui_0055 0.67 +0.8 52,994 + +0.8 52,994 + Dsui_0055 0.67 -0.8 53,002 - Dsui_0055 0.68 -2.3 53,160 + +0.8 53,173 - Dsui_0055 0.82 -0.8 53,214 - Dsui_0055 0.86 -2.2 53,223 + Dsui_0055 0.86 +0.8 53,250 + Dsui_0055 0.89 -0.2 53,296 - -3.0 53,499 - Dsui_0056 0.14 -1.8 53,557 - Dsui_0056 0.20 -4.3 53,593 - Dsui_0056 0.24 -1.7 53,637 - Dsui_0056 0.28 -4.9 53,650 + -0.2 53,712 - Dsui_0056 0.37 -2.7 53,770 - Dsui_0056 0.43 -4.1 53,790 + Dsui_0056 0.45 +0.8 53,829 + Dsui_0056 0.49 -0.2 53,952 - Dsui_0056 0.62 -2.6 54,093 - Dsui_0056 0.78 -2.0 54,093 - Dsui_0056 0.78 -4.5 54,279 + -0.2 54,340 - +0.3 54,430 + Dsui_0057 0.11 +0.8 54,430 + Dsui_0057 0.11 +0.8 54,430 + Dsui_0057 0.11 -1.2 54,457 - Dsui_0057 0.13 -3.6 54,557 + Dsui_0057 0.22 -0.8 54,585 + Dsui_0057 0.24 -1.2 54,845 - Dsui_0057 0.46 -1.5 54,848 - Dsui_0057 0.46 -3.1 54,873 + Dsui_0057 0.48 -0.2 54,873 + Dsui_0057 0.48 -0.8 54,881 - Dsui_0057 0.49 -1.7 54,910 - Dsui_0057 0.51 -1.8 54,961 - Dsui_0057 0.56 -3.2 55,089 - Dsui_0057 0.66 -3.0 55,227 + Dsui_0057 0.78 -0.2 55,235 - Dsui_0057 0.79 -3.9 55,262 - Dsui_0057 0.81 -2.0
Or see this region's nucleotide sequence