Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03985

Experiment: PYE 25C survival rep2 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 25C survival rep2 12 days
3,262,458	+		CCNA_03112	0.39	-1.8
3,262,466	-		CCNA_03112	0.40	-0.1
3,262,466	-		CCNA_03112	0.40	-0.4
3,262,468	+		CCNA_03112	0.40	-1.0
3,262,468	-		CCNA_03112	0.40	+0.8
3,262,468	-		CCNA_03112	0.40	-0.1
3,262,476	-		CCNA_03112	0.40	-0.2
3,262,483	-		CCNA_03112	0.41	-1.2
3,262,515	-		CCNA_03112	0.43	+0.7
3,262,515	-		CCNA_03112	0.43	+0.2
3,262,515	-		CCNA_03112	0.43	-1.8
3,262,541	+		CCNA_03112	0.45	-1.1
3,262,551	+		CCNA_03112	0.46	+0.0
3,262,561	+		CCNA_03112	0.47	+0.1
3,262,576	-		CCNA_03112	0.48	-0.0
3,262,584	-		CCNA_03112	0.49	+0.3
3,262,594	-		CCNA_03112	0.50	+0.5
3,262,611	+		CCNA_03112	0.51	+0.7
3,262,611	+		CCNA_03112	0.51	-0.9
3,262,619	-		CCNA_03112	0.52	+0.3
3,262,619	-		CCNA_03112	0.52	+0.1
3,262,643	+		CCNA_03112	0.53	+2.8
3,262,643	+		CCNA_03112	0.53	-1.2
3,262,643	+		CCNA_03112	0.53	-0.5
3,262,646	-		CCNA_03112	0.54	+0.9
3,262,651	-				-0.9
3,262,651	-		CCNA_03112	0.54	-0.2
3,262,685	-		CCNA_03112	0.57	+0.7
3,262,689	+		CCNA_03112	0.57	+0.6
3,262,689	-		CCNA_03112	0.57	-0.5
3,262,699	+		CCNA_03112	0.58	-1.1
3,262,752	+		CCNA_03112	0.62	-0.0
3,262,752	+		CCNA_03112	0.62	+0.9
3,262,752	+		CCNA_03112	0.62	+1.0
3,262,760	-		CCNA_03112	0.62	+0.0
3,262,760	-		CCNA_03112	0.62	+0.3
3,262,807	-		CCNA_03112	0.66	+0.1
3,262,829	-		CCNA_03112	0.68	+0.7
3,262,892	+		CCNA_03112	0.73	-0.6
3,262,899	+		CCNA_03112	0.73	+0.7
3,262,899	+		CCNA_03112	0.73	+0.1
3,262,899	+		CCNA_03112	0.73	+2.1
3,262,899	+		CCNA_03112	0.73	-1.1
3,262,899	+		CCNA_03112	0.73	+0.5
3,262,900	-		CCNA_03112	0.73	-0.2
3,262,907	-		CCNA_03112	0.74	-0.4
3,262,907	-		CCNA_03112	0.74	-1.3
3,262,907	-		CCNA_03112	0.74	+0.5
3,262,907	-		CCNA_03112	0.74	+0.6
3,262,928	+		CCNA_03112	0.76	-0.8
3,262,936	-		CCNA_03112	0.76	+0.5
3,262,936	-		CCNA_03112	0.76	-0.4
3,262,947	+		CCNA_03112	0.77	+0.8
3,262,979	+		CCNA_03112	0.79	+0.4
3,263,006	-		CCNA_03112	0.82	+0.5
3,263,011	-		CCNA_03112	0.82	-0.5
3,263,018	-		CCNA_03112	0.83	+0.1
3,263,023	-		CCNA_03112	0.83	-1.2
3,263,055	-		CCNA_03112	0.85	+0.1
3,263,060	-		CCNA_03112	0.86	+0.2
3,263,076	+		CCNA_03112	0.87	+1.5
3,263,084	-		CCNA_03112	0.88	-1.1
3,263,126	+				-0.7
3,263,137	-				+0.6
3,263,191	+				-0.5
3,263,220	+				+0.7
3,263,220	+				+0.1
3,263,228	-				-1.8
3,263,228	-				-0.0
3,263,239	+				-1.5
3,263,247	-				-0.5
3,263,249	+				-0.7
3,263,249	+				+0.5
3,263,249	+				+1.7
3,263,249	+				-1.2
3,263,249	+				-2.5
3,263,249	+				+0.6
3,263,249	+				-1.1
3,263,257	-				+2.7
3,263,257	-				+0.9
3,263,257	-				+1.5
3,263,257	-				+0.1
3,263,257	-				+0.8
3,263,257	-				-0.1
3,263,264	+				-1.9
3,263,269	+				-0.9
3,263,269	+				+1.4
3,263,277	-				-1.7
3,263,278	-				+1.5
3,263,281	+				-2.4
3,263,300	+				-1.9
3,263,303	-				+0.9
3,263,308	-				-1.2
3,263,337	+				+1.1
3,263,343	+				+0.6
3,263,356	+				+0.8
3,263,445	+		CCNA_03985	0.17	-3.4
3,263,470	+		CCNA_03985	0.22	+1.9
3,263,489	+		CCNA_03985	0.27	+0.1
3,263,493	+		CCNA_03985	0.28	-2.3
3,263,494	+		CCNA_03985	0.28	-0.5
3,263,497	-		CCNA_03985	0.29	+2.5
3,263,497	-		CCNA_03985	0.29	+1.5
3,263,518	+		CCNA_03985	0.33	-2.6
3,263,549	+		CCNA_03985	0.40	-1.1
3,263,549	+		CCNA_03985	0.40	-1.1
3,263,554	+		CCNA_03985	0.41	+3.5
3,263,554	+		CCNA_03985	0.41	-1.1
3,263,554	+		CCNA_03985	0.41	+0.9
3,263,554	+		CCNA_03985	0.41	-0.3
3,263,559	+		CCNA_03985	0.43	+0.1
3,263,559	+		CCNA_03985	0.43	-1.0
3,263,562	-		CCNA_03985	0.43	+0.9
3,263,562	-		CCNA_03985	0.43	+0.5
3,263,571	+		CCNA_03985	0.45	+1.1
3,263,572	-		CCNA_03985	0.46	+1.5
3,263,639	+		CCNA_03985	0.61	-1.3
3,263,693	-		CCNA_03985	0.73	+2.5
3,263,706	+		CCNA_03985	0.76	-3.2
3,263,715	+		CCNA_03985	0.78	-0.9
3,263,723	-		CCNA_03985	0.80	-1.2
3,263,759	-		CCNA_03985	0.88	+0.9
3,263,761	+		CCNA_03985	0.88	+1.2
3,263,768	-				-1.0
3,263,769	-				-1.3
3,263,769	-				+0.5
3,263,772	+				-0.8
3,263,796	+				+1.3
3,263,804	-				-0.3
3,263,812	-				-0.8
3,263,838	+				-1.5
3,263,846	-				-0.1
3,263,846	-				-0.1
3,263,848	+				+0.3
3,263,851	-				-1.1
3,263,856	-		CCNA_03113	0.11	-1.2
3,263,866	-		CCNA_03113	0.12	+0.1
3,263,884	+		CCNA_03113	0.14	-1.2
3,263,892	-		CCNA_03113	0.16	+0.1
3,263,925	+		CCNA_03113	0.20	-0.2
3,263,928	-		CCNA_03113	0.21	+0.1
3,263,955	+		CCNA_03113	0.24	-0.5
3,263,969	+		CCNA_03113	0.26	-1.0
3,264,010	+		CCNA_03113	0.32	+0.9
3,264,011	+		CCNA_03113	0.32	+1.2
3,264,016	+		CCNA_03113	0.33	-0.3
3,264,026	-		CCNA_03113	0.34	-0.6
3,264,068	-		CCNA_03113	0.40	+0.3
3,264,097	+		CCNA_03113	0.44	-0.3
3,264,101	-		CCNA_03113	0.45	-0.4
3,264,113	+		CCNA_03113	0.46	+2.5
3,264,142	+		CCNA_03113	0.50	+2.5
3,264,144	-		CCNA_03113	0.51	+0.5
3,264,144	-				+0.1
3,264,150	-		CCNA_03113	0.51	+0.4
3,264,150	-				+2.5
3,264,179	+		CCNA_03113	0.55	-0.1
3,264,186	+		CCNA_03113	0.56	-0.5
3,264,209	-		CCNA_03113	0.60	+0.3
3,264,244	-		CCNA_03113	0.64	-0.5
3,264,244	-		CCNA_03113	0.64	+0.6
3,264,244	-		CCNA_03113	0.64	-0.2
3,264,254	+		CCNA_03113	0.66	-0.9
3,264,254	+		CCNA_03113	0.66	-1.0
3,264,254	+		CCNA_03113	0.66	+0.4
3,264,262	-		CCNA_03113	0.67	-2.0
3,264,266	+		CCNA_03113	0.68	+2.5
3,264,297	+		CCNA_03113	0.72	+1.5
3,264,300	-		CCNA_03113	0.72	+3.5
3,264,300	-		CCNA_03113	0.72	-0.7
3,264,303	+		CCNA_03113	0.73	-1.4
3,264,305	-		CCNA_03113	0.73	-0.3
3,264,336	+		CCNA_03113	0.77	+2.1
3,264,344	-		CCNA_03113	0.78	-0.3
3,264,344	-				-0.1
3,264,347	+		CCNA_03113	0.79	-1.3
3,264,353	+		CCNA_03113	0.80	-0.1
3,264,360	-		CCNA_03113	0.81	-0.6
3,264,360	-		CCNA_03113	0.81	-1.2
3,264,360	-		CCNA_03113	0.81	+0.0
3,264,361	-		CCNA_03113	0.81	-0.2
3,264,361	-		CCNA_03113	0.81	-1.1
3,264,361	-		CCNA_03113	0.81	-0.5
3,264,361	-		CCNA_03113	0.81	-0.7
3,264,366	-		CCNA_03113	0.81	+0.2
3,264,412	-		CCNA_03113	0.88	-0.1
3,264,428	+				-0.8
3,264,428	+				+0.5
3,264,465	+				+0.1
3,264,493	-				+0.2
3,264,536	+				-0.3
3,264,540	+				+1.5
3,264,554	-				+0.4
3,264,623	-		CCNA_03114	0.25	+0.1
3,264,625	-		CCNA_03114	0.27	+0.5
3,264,648	-		CCNA_03114	0.40	-0.5
3,264,648	-		CCNA_03114	0.40	-0.2
3,264,657	+		CCNA_03114	0.45	+0.1
3,264,657	+		CCNA_03114	0.45	+0.9
3,264,662	+		CCNA_03114	0.47	+0.2
3,264,665	+		CCNA_03114	0.49	+0.5
3,264,670	-		CCNA_03114	0.52	-0.5
3,264,771	-				+1.5
3,264,778	+				+1.3
3,264,786	-				-0.6