Experiment: PYE 25C survival rep2 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01981 and CCNA_03960 overlap by 7 nucleotides CCNA_03960 and CCNA_01982 overlap by 2 nucleotides CCNA_01982 and CCNA_01983 are separated by 67 nucleotides
CCNA_01981: CCNA_01981 - DNA translocation competence protein ComA, at 2,125,014 to 2,127,191
_01981
CCNA_03960: CCNA_03960 - hypothetical protein, at 2,127,185 to 2,127,355
_03960
CCNA_01982: CCNA_01982 - glutamyl-tRNA(Glx) synthetase (EC 6.1.1.24) (from data) , at 2,127,354 to 2,128,766
_01982
CCNA_01983: CCNA_01983 - citrate synthase, at 2,128,834 to 2,130,114
_01983
Position (kb)
2127
2128
2129 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2126.383 kb on - strand, within CCNA_01981 at 2126.394 kb on + strand, within CCNA_01981 at 2126.446 kb on - strand, within CCNA_01981 at 2126.470 kb on - strand, within CCNA_01981 at 2126.475 kb on + strand, within CCNA_01981 at 2126.491 kb on + strand, within CCNA_01981 at 2126.507 kb on + strand at 2126.509 kb on - strand, within CCNA_01981 at 2126.609 kb on - strand, within CCNA_01981 at 2126.637 kb on + strand, within CCNA_01981 at 2126.643 kb on - strand, within CCNA_01981 at 2126.686 kb on - strand, within CCNA_01981 at 2126.742 kb on + strand, within CCNA_01981 at 2126.750 kb on - strand, within CCNA_01981 at 2126.780 kb on + strand, within CCNA_01981 at 2126.788 kb on - strand, within CCNA_01981 at 2126.788 kb on - strand, within CCNA_01981 at 2126.801 kb on + strand, within CCNA_01981 at 2126.847 kb on - strand, within CCNA_01981 at 2126.941 kb on - strand, within CCNA_01981 at 2127.003 kb on - strand at 2127.026 kb on + strand at 2127.026 kb on + strand at 2127.034 kb on - strand at 2127.159 kb on + strand at 2127.183 kb on + strand at 2127.329 kb on + strand, within CCNA_03960 at 2128.736 kb on + strand at 2128.747 kb on + strand at 2128.833 kb on - strand at 2128.904 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 25C survival rep2 12 days remove 2,126,383 - CCNA_01981 0.63 -0.9 2,126,394 + CCNA_01981 0.63 -1.3 2,126,446 - CCNA_01981 0.66 -0.1 2,126,470 - CCNA_01981 0.67 -1.7 2,126,475 + CCNA_01981 0.67 -1.0 2,126,491 + CCNA_01981 0.68 -0.3 2,126,507 + +1.1 2,126,509 - CCNA_01981 0.69 +0.5 2,126,609 - CCNA_01981 0.73 -0.1 2,126,637 + CCNA_01981 0.75 -1.3 2,126,643 - CCNA_01981 0.75 +0.1 2,126,686 - CCNA_01981 0.77 -1.0 2,126,742 + CCNA_01981 0.79 -0.0 2,126,750 - CCNA_01981 0.80 -0.4 2,126,780 + CCNA_01981 0.81 +0.4 2,126,788 - CCNA_01981 0.81 -0.1 2,126,788 - CCNA_01981 0.81 -1.0 2,126,801 + CCNA_01981 0.82 -1.9 2,126,847 - CCNA_01981 0.84 +0.3 2,126,941 - CCNA_01981 0.88 -0.3 2,127,003 - +0.6 2,127,026 + +0.4 2,127,026 + -0.6 2,127,034 - -1.1 2,127,159 + +1.7 2,127,183 + -0.4 2,127,329 + CCNA_03960 0.84 +0.1 2,128,736 + -0.7 2,128,747 + +0.5 2,128,833 - +2.7 2,128,904 + +1.1
Or see this region's nucleotide sequence