Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01982

Experiment: PYE 25C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01981 and CCNA_03960 overlap by 7 nucleotidesCCNA_03960 and CCNA_01982 overlap by 2 nucleotidesCCNA_01982 and CCNA_01983 are separated by 67 nucleotides CCNA_01981: CCNA_01981 - DNA translocation competence protein ComA, at 2,125,014 to 2,127,191 _01981 CCNA_03960: CCNA_03960 - hypothetical protein, at 2,127,185 to 2,127,355 _03960 CCNA_01982: CCNA_01982 - glutamyl-tRNA(Glx) synthetase (EC 6.1.1.24) (from data), at 2,127,354 to 2,128,766 _01982 CCNA_01983: CCNA_01983 - citrate synthase, at 2,128,834 to 2,130,114 _01983 Position (kb) 2127 2128 2129Strain fitness (log2 ratio) -2 -1 0 1 2at 2126.383 kb on - strand, within CCNA_01981at 2126.394 kb on + strand, within CCNA_01981at 2126.446 kb on - strand, within CCNA_01981at 2126.470 kb on - strand, within CCNA_01981at 2126.475 kb on + strand, within CCNA_01981at 2126.491 kb on + strand, within CCNA_01981at 2126.507 kb on + strandat 2126.509 kb on - strand, within CCNA_01981at 2126.609 kb on - strand, within CCNA_01981at 2126.637 kb on + strand, within CCNA_01981at 2126.643 kb on - strand, within CCNA_01981at 2126.686 kb on - strand, within CCNA_01981at 2126.742 kb on + strand, within CCNA_01981at 2126.750 kb on - strand, within CCNA_01981at 2126.780 kb on + strand, within CCNA_01981at 2126.788 kb on - strand, within CCNA_01981at 2126.788 kb on - strand, within CCNA_01981at 2126.801 kb on + strand, within CCNA_01981at 2126.847 kb on - strand, within CCNA_01981at 2126.941 kb on - strand, within CCNA_01981at 2127.003 kb on - strandat 2127.026 kb on + strandat 2127.026 kb on + strandat 2127.034 kb on - strandat 2127.159 kb on + strandat 2127.183 kb on + strandat 2127.329 kb on + strand, within CCNA_03960at 2128.736 kb on + strandat 2128.747 kb on + strandat 2128.833 kb on - strandat 2128.904 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 25C survival rep2 12 days
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2,126,383 - CCNA_01981 0.63 -0.9
2,126,394 + CCNA_01981 0.63 -1.3
2,126,446 - CCNA_01981 0.66 -0.1
2,126,470 - CCNA_01981 0.67 -1.7
2,126,475 + CCNA_01981 0.67 -1.0
2,126,491 + CCNA_01981 0.68 -0.3
2,126,507 + +1.1
2,126,509 - CCNA_01981 0.69 +0.5
2,126,609 - CCNA_01981 0.73 -0.1
2,126,637 + CCNA_01981 0.75 -1.3
2,126,643 - CCNA_01981 0.75 +0.1
2,126,686 - CCNA_01981 0.77 -1.0
2,126,742 + CCNA_01981 0.79 -0.0
2,126,750 - CCNA_01981 0.80 -0.4
2,126,780 + CCNA_01981 0.81 +0.4
2,126,788 - CCNA_01981 0.81 -0.1
2,126,788 - CCNA_01981 0.81 -1.0
2,126,801 + CCNA_01981 0.82 -1.9
2,126,847 - CCNA_01981 0.84 +0.3
2,126,941 - CCNA_01981 0.88 -0.3
2,127,003 - +0.6
2,127,026 + +0.4
2,127,026 + -0.6
2,127,034 - -1.1
2,127,159 + +1.7
2,127,183 + -0.4
2,127,329 + CCNA_03960 0.84 +0.1
2,128,736 + -0.7
2,128,747 + +0.5
2,128,833 - +2.7
2,128,904 + +1.1

Or see this region's nucleotide sequence