Experiment: PYE 25C survival rep2 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00738 and CCNA_00740 are separated by 402 nucleotides CCNA_00740 and CCNA_00741 overlap by 1 nucleotides CCNA_00741 and CCNA_00742 are separated by 57 nucleotides
CCNA_00738: CCNA_00738 - DegQ-family trypsin-like serine prototease, at 797,019 to 798,110
_00738
CCNA_00740: CCNA_00740 - riboflavin kinase/FMN adenylyltransferase, at 798,513 to 799,454
_00740
CCNA_00741: CCNA_00741 - 3-hydroxybutyryl-CoA dehydratase, at 799,454 to 799,879
_00741
CCNA_00742: CCNA_00742 - HAD superfamily sugar phosphatase, at 799,937 to 800,797
_00742
Position (kb) 798
799
800 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 797.520 kb on - strand, within CCNA_00738 at 797.545 kb on + strand, within CCNA_00738 at 797.550 kb on + strand, within CCNA_00738 at 797.550 kb on + strand, within CCNA_00738 at 797.553 kb on - strand, within CCNA_00738 at 797.558 kb on - strand, within CCNA_00738 at 797.565 kb on - strand, within CCNA_00738 at 797.579 kb on - strand, within CCNA_00738 at 797.582 kb on - strand, within CCNA_00738 at 797.584 kb on + strand, within CCNA_00738 at 797.592 kb on + strand, within CCNA_00738 at 797.592 kb on + strand, within CCNA_00738 at 797.600 kb on - strand, within CCNA_00738 at 797.600 kb on - strand, within CCNA_00738 at 797.600 kb on - strand, within CCNA_00738 at 797.610 kb on + strand, within CCNA_00738 at 797.662 kb on + strand, within CCNA_00738 at 797.662 kb on - strand, within CCNA_00738 at 797.681 kb on + strand, within CCNA_00738 at 797.686 kb on + strand, within CCNA_00738 at 797.686 kb on + strand, within CCNA_00738 at 797.686 kb on + strand, within CCNA_00738 at 797.686 kb on + strand, within CCNA_00738 at 797.694 kb on - strand, within CCNA_00738 at 797.694 kb on - strand, within CCNA_00738 at 797.694 kb on - strand, within CCNA_00738 at 797.694 kb on - strand, within CCNA_00738 at 797.694 kb on - strand, within CCNA_00738 at 797.694 kb on - strand, within CCNA_00738 at 797.696 kb on + strand, within CCNA_00738 at 797.696 kb on + strand, within CCNA_00738 at 797.760 kb on + strand, within CCNA_00738 at 797.775 kb on + strand, within CCNA_00738 at 797.781 kb on + strand, within CCNA_00738 at 797.782 kb on + strand, within CCNA_00738 at 797.792 kb on + strand, within CCNA_00738 at 797.802 kb on + strand, within CCNA_00738 at 797.807 kb on + strand, within CCNA_00738 at 797.807 kb on + strand, within CCNA_00738 at 797.815 kb on - strand, within CCNA_00738 at 797.817 kb on + strand, within CCNA_00738 at 797.826 kb on - strand, within CCNA_00738 at 797.832 kb on - strand, within CCNA_00738 at 797.834 kb on + strand, within CCNA_00738 at 797.835 kb on + strand, within CCNA_00738 at 797.846 kb on + strand, within CCNA_00738 at 797.846 kb on + strand, within CCNA_00738 at 797.854 kb on - strand, within CCNA_00738 at 797.898 kb on - strand, within CCNA_00738 at 797.900 kb on - strand, within CCNA_00738 at 797.906 kb on + strand, within CCNA_00738 at 797.919 kb on + strand, within CCNA_00738 at 797.927 kb on - strand, within CCNA_00738 at 797.939 kb on - strand, within CCNA_00738 at 797.940 kb on - strand, within CCNA_00738 at 797.961 kb on - strand, within CCNA_00738 at 797.985 kb on - strand, within CCNA_00738 at 798.023 kb on + strand at 798.023 kb on + strand at 798.031 kb on - strand at 798.033 kb on + strand at 798.033 kb on + strand at 798.041 kb on - strand at 798.041 kb on - strand at 798.041 kb on - strand at 798.064 kb on - strand at 798.100 kb on + strand at 798.122 kb on - strand at 798.134 kb on + strand at 798.136 kb on + strand at 798.136 kb on + strand at 798.136 kb on + strand at 798.136 kb on + strand at 798.136 kb on + strand at 798.136 kb on + strand at 798.136 kb on + strand at 798.136 kb on + strand at 798.136 kb on + strand at 798.142 kb on - strand at 798.142 kb on - strand at 798.144 kb on - strand at 798.144 kb on - strand at 798.144 kb on - strand at 798.144 kb on - strand at 798.144 kb on - strand at 798.144 kb on - strand at 798.149 kb on + strand at 798.149 kb on + strand at 798.149 kb on + strand at 798.157 kb on - strand at 798.157 kb on - strand at 798.157 kb on - strand at 798.157 kb on - strand at 798.203 kb on + strand at 798.218 kb on + strand at 798.218 kb on + strand at 798.226 kb on - strand at 798.226 kb on - strand at 798.304 kb on + strand at 798.312 kb on - strand at 798.328 kb on + strand at 798.336 kb on - strand at 798.378 kb on + strand at 798.388 kb on + strand at 798.398 kb on + strand at 798.398 kb on + strand at 798.431 kb on - strand at 798.431 kb on - strand at 798.431 kb on - strand at 798.448 kb on + strand at 798.448 kb on + strand at 798.485 kb on + strand at 798.501 kb on + strand at 798.508 kb on - strand at 798.511 kb on + strand at 798.511 kb on + strand at 798.519 kb on - strand at 798.519 kb on - strand at 799.441 kb on + strand at 799.441 kb on + strand at 799.441 kb on + strand at 799.441 kb on + strand at 799.449 kb on - strand at 799.449 kb on - strand at 799.481 kb on - strand at 799.516 kb on - strand, within CCNA_00741 at 799.517 kb on - strand, within CCNA_00741 at 799.543 kb on - strand, within CCNA_00741 at 799.552 kb on - strand, within CCNA_00741 at 799.552 kb on - strand, within CCNA_00741 at 799.607 kb on - strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.630 kb on + strand, within CCNA_00741 at 799.632 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.638 kb on - strand, within CCNA_00741 at 799.660 kb on + strand, within CCNA_00741 at 799.670 kb on - strand, within CCNA_00741 at 799.670 kb on - strand, within CCNA_00741 at 799.670 kb on - strand, within CCNA_00741 at 799.689 kb on - strand, within CCNA_00741 at 799.720 kb on + strand, within CCNA_00741 at 799.720 kb on + strand, within CCNA_00741 at 799.725 kb on + strand, within CCNA_00741 at 799.728 kb on - strand, within CCNA_00741 at 799.728 kb on - strand, within CCNA_00741 at 799.730 kb on + strand, within CCNA_00741 at 799.753 kb on - strand, within CCNA_00741 at 799.772 kb on - strand, within CCNA_00741 at 799.783 kb on + strand, within CCNA_00741 at 799.783 kb on + strand, within CCNA_00741 at 799.808 kb on - strand, within CCNA_00741 at 799.863 kb on + strand at 799.881 kb on - strand at 799.885 kb on + strand at 799.909 kb on + strand at 799.912 kb on - strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.917 kb on - strand at 799.917 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.946 kb on - strand at 799.979 kb on - strand at 799.985 kb on + strand at 799.985 kb on - strand at 799.993 kb on - strand at 800.054 kb on + strand, within CCNA_00742 at 800.097 kb on + strand, within CCNA_00742 at 800.193 kb on + strand, within CCNA_00742 at 800.198 kb on + strand, within CCNA_00742 at 800.211 kb on - strand, within CCNA_00742 at 800.211 kb on - strand, within CCNA_00742 at 800.261 kb on - strand, within CCNA_00742 at 800.302 kb on - strand, within CCNA_00742 at 800.317 kb on - strand, within CCNA_00742 at 800.330 kb on - strand, within CCNA_00742 at 800.332 kb on - strand, within CCNA_00742 at 800.352 kb on + strand, within CCNA_00742 at 800.360 kb on - strand, within CCNA_00742 at 800.394 kb on + strand, within CCNA_00742 at 800.402 kb on - strand, within CCNA_00742 at 800.417 kb on - strand, within CCNA_00742 at 800.425 kb on - strand, within CCNA_00742 at 800.438 kb on - strand, within CCNA_00742
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 25C survival rep2 12 days remove 797,520 - CCNA_00738 0.46 -2.6 797,545 + CCNA_00738 0.48 -0.1 797,550 + CCNA_00738 0.49 -0.7 797,550 + CCNA_00738 0.49 -1.1 797,553 - CCNA_00738 0.49 -0.2 797,558 - CCNA_00738 0.49 -0.1 797,565 - CCNA_00738 0.50 -1.9 797,579 - CCNA_00738 0.51 -0.2 797,582 - CCNA_00738 0.52 +0.9 797,584 + CCNA_00738 0.52 -2.2 797,592 + CCNA_00738 0.52 +0.5 797,592 + CCNA_00738 0.52 +0.5 797,600 - CCNA_00738 0.53 -0.7 797,600 - CCNA_00738 0.53 -1.6 797,600 - CCNA_00738 0.53 -0.2 797,610 + CCNA_00738 0.54 -0.7 797,662 + CCNA_00738 0.59 -1.6 797,662 - CCNA_00738 0.59 -0.5 797,681 + CCNA_00738 0.61 -0.1 797,686 + CCNA_00738 0.61 -1.4 797,686 + CCNA_00738 0.61 -1.9 797,686 + CCNA_00738 0.61 -1.9 797,686 + CCNA_00738 0.61 +1.3 797,694 - CCNA_00738 0.62 +1.2 797,694 - CCNA_00738 0.62 -1.4 797,694 - CCNA_00738 0.62 -0.6 797,694 - CCNA_00738 0.62 -1.9 797,694 - CCNA_00738 0.62 -1.9 797,694 - CCNA_00738 0.62 -0.9 797,696 + CCNA_00738 0.62 +0.8 797,696 + CCNA_00738 0.62 -0.0 797,760 + CCNA_00738 0.68 +0.8 797,775 + CCNA_00738 0.69 +0.9 797,781 + CCNA_00738 0.70 -1.5 797,782 + CCNA_00738 0.70 +0.2 797,792 + CCNA_00738 0.71 -0.3 797,802 + CCNA_00738 0.72 +1.8 797,807 + CCNA_00738 0.72 -0.9 797,807 + CCNA_00738 0.72 -0.9 797,815 - CCNA_00738 0.73 -1.2 797,817 + CCNA_00738 0.73 -0.9 797,826 - CCNA_00738 0.74 -0.8 797,832 - CCNA_00738 0.74 +0.3 797,834 + CCNA_00738 0.75 -0.5 797,835 + CCNA_00738 0.75 -1.1 797,846 + CCNA_00738 0.76 +0.7 797,846 + CCNA_00738 0.76 +0.5 797,854 - CCNA_00738 0.76 +0.7 797,898 - CCNA_00738 0.80 +0.4 797,900 - CCNA_00738 0.81 -0.3 797,906 + CCNA_00738 0.81 -0.3 797,919 + CCNA_00738 0.82 +0.7 797,927 - CCNA_00738 0.83 -0.5 797,939 - CCNA_00738 0.84 +0.4 797,940 - CCNA_00738 0.84 +0.2 797,961 - CCNA_00738 0.86 +0.5 797,985 - CCNA_00738 0.88 -0.1 798,023 + +1.2 798,023 + -0.9 798,031 - +0.1 798,033 + +1.1 798,033 + +0.5 798,041 - -0.1 798,041 - -0.2 798,041 - -0.5 798,064 - -1.6 798,100 + -0.3 798,122 - -1.8 798,134 + -1.1 798,136 + +0.1 798,136 + +1.5 798,136 + +0.5 798,136 + -0.3 798,136 + -2.2 798,136 + -0.6 798,136 + +0.4 798,136 + -0.7 798,136 + -0.6 798,142 - +1.7 798,142 - -1.8 798,144 - +3.1 798,144 - +0.0 798,144 - -0.1 798,144 - -0.1 798,144 - -0.1 798,144 - -0.8 798,149 + -0.8 798,149 + -0.9 798,149 + -1.6 798,157 - -0.0 798,157 - -0.8 798,157 - -1.2 798,157 - -1.0 798,203 + +0.9 798,218 + -0.2 798,218 + +0.2 798,226 - -0.7 798,226 - -0.8 798,304 + +0.5 798,312 - +0.3 798,328 + +0.3 798,336 - -2.4 798,378 + +0.5 798,388 + -1.0 798,398 + +0.3 798,398 + -0.8 798,431 - -0.1 798,431 - -0.6 798,431 - +1.1 798,448 + -2.0 798,448 + -1.3 798,485 + -1.8 798,501 + +0.5 798,508 - -0.2 798,511 + -2.1 798,511 + -0.4 798,519 - +0.2 798,519 - -0.9 799,441 + +1.5 799,441 + -0.6 799,441 + -1.6 799,441 + +0.9 799,449 - +0.0 799,449 - +0.6 799,481 - -1.0 799,516 - CCNA_00741 0.15 -0.7 799,517 - CCNA_00741 0.15 -0.5 799,543 - CCNA_00741 0.21 -1.0 799,552 - CCNA_00741 0.23 -0.0 799,552 - CCNA_00741 0.23 -1.1 799,607 - CCNA_00741 0.36 -2.2 799,626 + CCNA_00741 0.40 -1.8 799,626 + CCNA_00741 0.40 -0.5 799,626 + CCNA_00741 0.40 -0.1 799,626 + CCNA_00741 0.40 -1.3 799,626 + CCNA_00741 0.40 +2.5 799,630 + CCNA_00741 0.41 -0.3 799,632 - CCNA_00741 0.42 -0.3 799,634 - CCNA_00741 0.42 -0.5 799,634 - CCNA_00741 0.42 -0.8 799,634 - CCNA_00741 0.42 +0.8 799,634 - CCNA_00741 0.42 +0.2 799,638 - CCNA_00741 0.43 +0.3 799,660 + CCNA_00741 0.48 -0.8 799,670 - CCNA_00741 0.51 -0.9 799,670 - CCNA_00741 0.51 -0.8 799,670 - CCNA_00741 0.51 -0.9 799,689 - CCNA_00741 0.55 -1.7 799,720 + CCNA_00741 0.62 -0.1 799,720 + CCNA_00741 0.62 +1.5 799,725 + CCNA_00741 0.64 -0.7 799,728 - CCNA_00741 0.64 -1.1 799,728 - CCNA_00741 0.64 -0.3 799,730 + CCNA_00741 0.65 +1.3 799,753 - CCNA_00741 0.70 -0.0 799,772 - CCNA_00741 0.75 -1.3 799,783 + CCNA_00741 0.77 -0.1 799,783 + CCNA_00741 0.77 -0.3 799,808 - CCNA_00741 0.83 -1.0 799,863 + -1.5 799,881 - +0.0 799,885 + +0.2 799,909 + +0.6 799,912 - +0.7 799,914 + -1.0 799,914 + -2.2 799,914 + -0.6 799,914 + -0.4 799,914 + -0.7 799,917 - -0.8 799,917 - -0.3 799,922 - -0.2 799,922 - -2.2 799,922 - -0.3 799,922 - -0.5 799,946 - -0.1 799,979 - -3.1 799,985 + +2.5 799,985 - -1.8 799,993 - -0.8 800,054 + CCNA_00742 0.14 +0.2 800,097 + CCNA_00742 0.19 +1.5 800,193 + CCNA_00742 0.30 +2.5 800,198 + CCNA_00742 0.30 +2.5 800,211 - CCNA_00742 0.32 -2.1 800,211 - CCNA_00742 0.32 -2.6 800,261 - CCNA_00742 0.38 -1.9 800,302 - CCNA_00742 0.42 -3.5 800,317 - CCNA_00742 0.44 -2.5 800,330 - CCNA_00742 0.46 -3.9 800,332 - CCNA_00742 0.46 +0.2 800,352 + CCNA_00742 0.48 +2.5 800,360 - CCNA_00742 0.49 -2.0 800,394 + CCNA_00742 0.53 +1.5 800,402 - CCNA_00742 0.54 -1.6 800,417 - CCNA_00742 0.56 -0.3 800,425 - CCNA_00742 0.57 +1.8 800,438 - CCNA_00742 0.58 -3.5
Or see this region's nucleotide sequence