Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00724

Experiment: PYE 25C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00721 and CCNA_00722 are separated by 57 nucleotidesCCNA_00722 and CCNA_00723 are separated by 174 nucleotidesCCNA_00723 and CCNA_00724 are separated by 18 nucleotidesCCNA_00724 and CCNA_00725 are separated by 200 nucleotidesCCNA_00725 and CCNA_00726 are separated by 50 nucleotides CCNA_00721: CCNA_00721 - chaperonin GroEL, at 777,942 to 779,585 _00721 CCNA_00722: CCNA_00722 - chaperonin GroES, at 779,643 to 779,933 _00722 CCNA_00723: CCNA_00723 - glyoxalase family protein, at 780,108 to 780,302 _00723 CCNA_00724: CCNA_00724 - hypothetical protein, at 780,321 to 780,749 _00724 CCNA_00725: CCNA_00725 - O6-methylguanine-DNA methyltransferase, at 780,950 to 781,612 _00725 CCNA_00726: CCNA_00726 - acyl-CoA dehydrogenase, at 781,663 to 782,970 _00726 Position (kb) 780 781Strain fitness (log2 ratio) -2 -1 0 1 2 3at 779.665 kb on - strandat 779.990 kb on - strandat 780.040 kb on - strandat 780.075 kb on + strandat 780.090 kb on + strandat 780.090 kb on + strandat 780.090 kb on + strandat 780.090 kb on + strandat 780.090 kb on + strandat 780.090 kb on + strandat 780.090 kb on + strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.114 kb on + strandat 780.116 kb on + strandat 780.122 kb on - strandat 780.124 kb on - strandat 780.132 kb on - strand, within CCNA_00723at 780.141 kb on + strand, within CCNA_00723at 780.141 kb on + strand, within CCNA_00723at 780.202 kb on + strand, within CCNA_00723at 780.233 kb on + strand, within CCNA_00723at 780.233 kb on + strand, within CCNA_00723at 780.235 kb on + strand, within CCNA_00723at 780.241 kb on - strand, within CCNA_00723at 780.241 kb on - strand, within CCNA_00723at 780.241 kb on - strand, within CCNA_00723at 780.286 kb on + strandat 780.316 kb on - strandat 780.344 kb on + strandat 780.391 kb on - strand, within CCNA_00724at 780.416 kb on + strand, within CCNA_00724at 780.416 kb on + strand, within CCNA_00724at 780.416 kb on + strand, within CCNA_00724at 780.422 kb on - strand, within CCNA_00724at 780.424 kb on + strand, within CCNA_00724at 780.424 kb on - strand, within CCNA_00724at 780.424 kb on - strand, within CCNA_00724at 780.434 kb on + strand, within CCNA_00724at 780.434 kb on + strand, within CCNA_00724at 780.448 kb on + strand, within CCNA_00724at 780.456 kb on - strand, within CCNA_00724at 780.456 kb on - strand, within CCNA_00724at 780.456 kb on - strand, within CCNA_00724at 780.456 kb on - strand, within CCNA_00724at 780.485 kb on + strand, within CCNA_00724at 780.485 kb on + strand, within CCNA_00724at 780.519 kb on - strand, within CCNA_00724at 780.521 kb on + strand, within CCNA_00724at 780.530 kb on - strand, within CCNA_00724at 780.534 kb on - strand, within CCNA_00724at 780.555 kb on + strand, within CCNA_00724at 780.561 kb on + strand, within CCNA_00724at 780.561 kb on + strand, within CCNA_00724at 780.561 kb on + strand, within CCNA_00724at 780.561 kb on + strand, within CCNA_00724at 780.561 kb on + strand, within CCNA_00724at 780.562 kb on + strand, within CCNA_00724at 780.563 kb on - strand, within CCNA_00724at 780.569 kb on - strand, within CCNA_00724at 780.570 kb on - strand, within CCNA_00724at 780.570 kb on - strand, within CCNA_00724at 780.575 kb on - strand, within CCNA_00724at 780.583 kb on + strand, within CCNA_00724at 780.657 kb on + strand, within CCNA_00724at 780.670 kb on - strand, within CCNA_00724at 780.677 kb on - strand, within CCNA_00724at 780.682 kb on - strand, within CCNA_00724at 780.703 kb on - strand, within CCNA_00724at 780.737 kb on + strandat 780.738 kb on + strandat 780.743 kb on + strandat 780.743 kb on + strandat 780.751 kb on - strandat 780.751 kb on - strandat 780.860 kb on + strandat 780.882 kb on + strandat 780.948 kb on + strandat 780.956 kb on - strandat 780.989 kb on + strandat 781.079 kb on - strand, within CCNA_00725at 781.124 kb on + strand, within CCNA_00725at 781.129 kb on + strand, within CCNA_00725at 781.129 kb on + strand, within CCNA_00725at 781.137 kb on - strand, within CCNA_00725at 781.137 kb on - strand, within CCNA_00725at 781.137 kb on - strand, within CCNA_00725at 781.148 kb on - strand, within CCNA_00725at 781.166 kb on + strand, within CCNA_00725at 781.174 kb on - strand, within CCNA_00725at 781.220 kb on - strand, within CCNA_00725at 781.220 kb on - strand, within CCNA_00725at 781.225 kb on - strand, within CCNA_00725at 781.317 kb on - strand, within CCNA_00725at 781.356 kb on - strand, within CCNA_00725at 781.394 kb on - strand, within CCNA_00725at 781.409 kb on - strand, within CCNA_00725at 781.418 kb on - strand, within CCNA_00725at 781.450 kb on - strand, within CCNA_00725at 781.481 kb on - strand, within CCNA_00725at 781.513 kb on + strand, within CCNA_00725at 781.613 kb on - strandat 781.689 kb on - strandat 781.689 kb on - strandat 781.717 kb on + strandat 781.718 kb on - strandat 781.736 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 25C survival rep2 12 days
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779,665 - -1.7
779,990 - -0.7
780,040 - -0.8
780,075 + +0.1
780,090 + -0.8
780,090 + +0.5
780,090 + -1.3
780,090 + +0.8
780,090 + -1.3
780,090 + -0.6
780,090 + -1.9
780,098 - -0.2
780,098 - -0.5
780,098 - -0.3
780,098 - -0.6
780,098 - -0.5
780,098 - -1.7
780,098 - -1.0
780,098 - -0.1
780,098 - -0.0
780,098 - -2.7
780,098 - -0.5
780,098 - -0.6
780,114 + -1.7
780,116 + +1.5
780,122 - -0.0
780,124 - -2.7
780,132 - CCNA_00723 0.12 -1.4
780,141 + CCNA_00723 0.17 +0.8
780,141 + CCNA_00723 0.17 +1.8
780,202 + CCNA_00723 0.48 -1.0
780,233 + CCNA_00723 0.64 -1.0
780,233 + CCNA_00723 0.64 -1.9
780,235 + CCNA_00723 0.65 -0.0
780,241 - CCNA_00723 0.68 -1.5
780,241 - CCNA_00723 0.68 -1.4
780,241 - CCNA_00723 0.68 +1.0
780,286 + -0.9
780,316 - -2.2
780,344 + +1.1
780,391 - CCNA_00724 0.16 -0.6
780,416 + CCNA_00724 0.22 +0.9
780,416 + CCNA_00724 0.22 -0.0
780,416 + CCNA_00724 0.22 +1.5
780,422 - CCNA_00724 0.24 +1.0
780,424 + CCNA_00724 0.24 +0.2
780,424 - CCNA_00724 0.24 +1.0
780,424 - CCNA_00724 0.24 +1.5
780,434 + CCNA_00724 0.26 -0.9
780,434 + CCNA_00724 0.26 -0.1
780,448 + CCNA_00724 0.30 -0.9
780,456 - CCNA_00724 0.31 +0.5
780,456 - CCNA_00724 0.31 -0.9
780,456 - CCNA_00724 0.31 +1.7
780,456 - CCNA_00724 0.31 -0.8
780,485 + CCNA_00724 0.38 +1.3
780,485 + CCNA_00724 0.38 +0.3
780,519 - CCNA_00724 0.46 -0.0
780,521 + CCNA_00724 0.47 +0.6
780,530 - CCNA_00724 0.49 +1.1
780,534 - CCNA_00724 0.50 +0.5
780,555 + CCNA_00724 0.55 +0.5
780,561 + CCNA_00724 0.56 -0.3
780,561 + CCNA_00724 0.56 +0.7
780,561 + CCNA_00724 0.56 +0.5
780,561 + CCNA_00724 0.56 +0.7
780,561 + CCNA_00724 0.56 +0.4
780,562 + CCNA_00724 0.56 -0.2
780,563 - CCNA_00724 0.56 -1.2
780,569 - CCNA_00724 0.58 +0.2
780,570 - CCNA_00724 0.58 -0.6
780,570 - CCNA_00724 0.58 -1.5
780,575 - CCNA_00724 0.59 -0.8
780,583 + CCNA_00724 0.61 +0.4
780,657 + CCNA_00724 0.78 +2.0
780,670 - CCNA_00724 0.81 +0.2
780,677 - CCNA_00724 0.83 -1.4
780,682 - CCNA_00724 0.84 -0.5
780,703 - CCNA_00724 0.89 -0.6
780,737 + +0.9
780,738 + +1.0
780,743 + +0.7
780,743 + +0.5
780,751 - +0.4
780,751 - -1.0
780,860 + -0.1
780,882 + -0.9
780,948 + -0.0
780,956 - +0.3
780,989 + +0.4
781,079 - CCNA_00725 0.19 -1.1
781,124 + CCNA_00725 0.26 +0.0
781,129 + CCNA_00725 0.27 -2.1
781,129 + CCNA_00725 0.27 -0.3
781,137 - CCNA_00725 0.28 -0.2
781,137 - CCNA_00725 0.28 -0.5
781,137 - CCNA_00725 0.28 +0.0
781,148 - CCNA_00725 0.30 -0.0
781,166 + CCNA_00725 0.33 +3.1
781,174 - CCNA_00725 0.34 +0.7
781,220 - CCNA_00725 0.41 -2.7
781,220 - CCNA_00725 0.41 -0.4
781,225 - CCNA_00725 0.41 -1.0
781,317 - CCNA_00725 0.55 -2.7
781,356 - CCNA_00725 0.61 +0.4
781,394 - CCNA_00725 0.67 +0.4
781,409 - CCNA_00725 0.69 -0.0
781,418 - CCNA_00725 0.71 -1.1
781,450 - CCNA_00725 0.75 -0.2
781,481 - CCNA_00725 0.80 +0.1
781,513 + CCNA_00725 0.85 -0.4
781,613 - +0.3
781,689 - +0.1
781,689 - +0.6
781,717 + -1.5
781,718 - +0.0
781,736 + +0.2

Or see this region's nucleotide sequence