Experiment: PYE 25C survival rep2 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00554 and CCNA_00555 are separated by 72 nucleotides CCNA_00555 and CCNA_00556 are separated by 84 nucleotides CCNA_00556 and CCNA_00557 overlap by 44 nucleotides CCNA_00557 and CCNA_00558 overlap by 4 nucleotides
CCNA_00554: CCNA_00554 - methyltransferase, at 570,238 to 571,044
_00554
CCNA_00555: CCNA_00555 - nitrogen regulatory protein P-II, at 571,117 to 571,461
_00555
CCNA_00556: CCNA_00556 - phospholipase D, at 571,546 to 573,063
_00556
CCNA_00557: CCNA_00557 - endonuclease/exonuclease/phosphatase family protein, at 573,020 to 573,799
_00557
CCNA_00558: CCNA_00558 - methyltransferase, at 573,796 to 574,461
_00558
Position (kb) 571
572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 570.560 kb on - strand, within CCNA_00554 at 570.582 kb on + strand, within CCNA_00554 at 570.605 kb on - strand, within CCNA_00554 at 570.639 kb on - strand, within CCNA_00554 at 570.648 kb on + strand, within CCNA_00554 at 570.649 kb on - strand, within CCNA_00554 at 570.665 kb on + strand, within CCNA_00554 at 570.752 kb on + strand, within CCNA_00554 at 570.752 kb on + strand, within CCNA_00554 at 570.752 kb on + strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.770 kb on - strand, within CCNA_00554 at 570.787 kb on + strand, within CCNA_00554 at 570.805 kb on - strand, within CCNA_00554 at 570.816 kb on + strand, within CCNA_00554 at 570.821 kb on + strand, within CCNA_00554 at 570.824 kb on - strand, within CCNA_00554 at 570.829 kb on - strand, within CCNA_00554 at 570.829 kb on - strand, within CCNA_00554 at 570.829 kb on - strand, within CCNA_00554 at 570.829 kb on - strand, within CCNA_00554 at 570.848 kb on + strand, within CCNA_00554 at 570.850 kb on - strand, within CCNA_00554 at 570.853 kb on + strand, within CCNA_00554 at 570.861 kb on - strand, within CCNA_00554 at 570.861 kb on - strand, within CCNA_00554 at 570.871 kb on + strand, within CCNA_00554 at 570.871 kb on + strand, within CCNA_00554 at 570.899 kb on - strand, within CCNA_00554 at 570.899 kb on - strand, within CCNA_00554 at 570.899 kb on - strand, within CCNA_00554 at 570.950 kb on - strand, within CCNA_00554 at 570.996 kb on + strand at 570.996 kb on + strand at 570.999 kb on - strand at 570.999 kb on - strand at 571.004 kb on - strand at 571.031 kb on + strand at 571.031 kb on + strand at 571.039 kb on - strand at 571.056 kb on - strand at 571.076 kb on + strand at 571.085 kb on + strand at 571.110 kb on - strand at 571.117 kb on + strand at 571.145 kb on - strand at 571.159 kb on - strand, within CCNA_00555 at 571.190 kb on + strand, within CCNA_00555 at 571.190 kb on + strand, within CCNA_00555 at 571.195 kb on + strand, within CCNA_00555 at 571.195 kb on + strand, within CCNA_00555 at 571.210 kb on - strand, within CCNA_00555 at 571.213 kb on - strand, within CCNA_00555 at 571.226 kb on + strand, within CCNA_00555 at 571.228 kb on - strand, within CCNA_00555 at 571.251 kb on + strand, within CCNA_00555 at 571.272 kb on + strand, within CCNA_00555 at 571.284 kb on + strand, within CCNA_00555 at 571.292 kb on - strand, within CCNA_00555 at 571.297 kb on - strand, within CCNA_00555 at 571.340 kb on + strand, within CCNA_00555 at 571.342 kb on + strand, within CCNA_00555 at 571.387 kb on + strand, within CCNA_00555 at 571.400 kb on + strand, within CCNA_00555 at 571.424 kb on + strand, within CCNA_00555 at 571.473 kb on + strand at 571.509 kb on - strand at 571.538 kb on + strand at 571.546 kb on - strand at 571.548 kb on + strand at 571.548 kb on + strand at 571.552 kb on - strand at 571.626 kb on + strand at 571.635 kb on - strand at 571.647 kb on - strand at 571.668 kb on + strand at 571.722 kb on + strand, within CCNA_00556 at 571.728 kb on + strand, within CCNA_00556 at 571.736 kb on - strand, within CCNA_00556 at 571.741 kb on - strand, within CCNA_00556 at 571.746 kb on - strand, within CCNA_00556 at 571.760 kb on - strand, within CCNA_00556 at 571.870 kb on + strand, within CCNA_00556 at 571.878 kb on + strand, within CCNA_00556 at 571.878 kb on + strand, within CCNA_00556 at 571.895 kb on - strand, within CCNA_00556 at 571.945 kb on + strand, within CCNA_00556 at 571.974 kb on - strand, within CCNA_00556 at 572.004 kb on + strand, within CCNA_00556 at 572.004 kb on + strand, within CCNA_00556 at 572.036 kb on + strand, within CCNA_00556 at 572.072 kb on + strand, within CCNA_00556 at 572.084 kb on - strand, within CCNA_00556 at 572.091 kb on + strand, within CCNA_00556 at 572.091 kb on + strand, within CCNA_00556 at 572.099 kb on - strand, within CCNA_00556 at 572.099 kb on - strand, within CCNA_00556 at 572.099 kb on - strand, within CCNA_00556 at 572.099 kb on - strand, within CCNA_00556 at 572.121 kb on - strand, within CCNA_00556 at 572.140 kb on + strand, within CCNA_00556 at 572.221 kb on - strand, within CCNA_00556 at 572.283 kb on + strand, within CCNA_00556 at 572.338 kb on - strand, within CCNA_00556 at 572.401 kb on - strand, within CCNA_00556 at 572.432 kb on - strand, within CCNA_00556 at 572.444 kb on + strand, within CCNA_00556 at 572.452 kb on - strand, within CCNA_00556 at 572.460 kb on + strand, within CCNA_00556 at 572.465 kb on + strand, within CCNA_00556 at 572.468 kb on - strand, within CCNA_00556 at 572.500 kb on + strand, within CCNA_00556 at 572.508 kb on - strand, within CCNA_00556 at 572.508 kb on - strand, within CCNA_00556 at 572.508 kb on - strand, within CCNA_00556 at 572.508 kb on - strand, within CCNA_00556 at 572.546 kb on - strand, within CCNA_00556 at 572.549 kb on + strand, within CCNA_00556 at 572.586 kb on + strand, within CCNA_00556 at 572.586 kb on + strand, within CCNA_00556 at 572.586 kb on + strand, within CCNA_00556 at 572.594 kb on - strand, within CCNA_00556 at 572.594 kb on - strand, within CCNA_00556 at 572.594 kb on - strand, within CCNA_00556 at 572.594 kb on - strand, within CCNA_00556 at 572.594 kb on - strand, within CCNA_00556 at 572.594 kb on - strand, within CCNA_00556 at 572.594 kb on - strand, within CCNA_00556 at 572.594 kb on - strand, within CCNA_00556 at 572.653 kb on + strand, within CCNA_00556 at 572.683 kb on + strand, within CCNA_00556 at 572.725 kb on + strand, within CCNA_00556 at 572.725 kb on + strand, within CCNA_00556 at 572.733 kb on - strand, within CCNA_00556 at 572.750 kb on - strand, within CCNA_00556 at 572.809 kb on + strand, within CCNA_00556 at 572.864 kb on + strand, within CCNA_00556 at 572.897 kb on + strand, within CCNA_00556 at 572.910 kb on - strand, within CCNA_00556 at 572.912 kb on + strand at 572.922 kb on + strand at 572.925 kb on - strand at 573.026 kb on - strand at 573.091 kb on - strand at 573.142 kb on + strand, within CCNA_00557 at 573.199 kb on - strand, within CCNA_00557 at 573.216 kb on + strand, within CCNA_00557 at 573.226 kb on + strand, within CCNA_00557 at 573.227 kb on + strand, within CCNA_00557 at 573.234 kb on + strand, within CCNA_00557 at 573.238 kb on + strand, within CCNA_00557 at 573.249 kb on - strand, within CCNA_00557 at 573.254 kb on - strand, within CCNA_00557 at 573.261 kb on + strand, within CCNA_00557 at 573.290 kb on - strand, within CCNA_00557 at 573.305 kb on - strand, within CCNA_00557 at 573.305 kb on - strand, within CCNA_00557 at 573.328 kb on + strand, within CCNA_00557 at 573.329 kb on + strand, within CCNA_00557 at 573.329 kb on + strand, within CCNA_00557 at 573.330 kb on + strand, within CCNA_00557 at 573.337 kb on - strand, within CCNA_00557 at 573.396 kb on - strand, within CCNA_00557 at 573.404 kb on + strand, within CCNA_00557 at 573.411 kb on - strand, within CCNA_00557 at 573.431 kb on - strand, within CCNA_00557 at 573.445 kb on + strand, within CCNA_00557 at 573.465 kb on + strand, within CCNA_00557 at 573.475 kb on + strand, within CCNA_00557 at 573.475 kb on + strand, within CCNA_00557 at 573.483 kb on - strand, within CCNA_00557 at 573.483 kb on - strand, within CCNA_00557 at 573.483 kb on - strand, within CCNA_00557 at 573.510 kb on + strand, within CCNA_00557 at 573.517 kb on - strand, within CCNA_00557 at 573.517 kb on - strand, within CCNA_00557 at 573.517 kb on - strand, within CCNA_00557 at 573.524 kb on + strand, within CCNA_00557 at 573.565 kb on + strand, within CCNA_00557 at 573.566 kb on - strand, within CCNA_00557 at 573.566 kb on - strand, within CCNA_00557 at 573.566 kb on - strand, within CCNA_00557 at 573.566 kb on - strand, within CCNA_00557 at 573.586 kb on - strand, within CCNA_00557 at 573.595 kb on + strand, within CCNA_00557 at 573.629 kb on - strand, within CCNA_00557 at 573.635 kb on - strand, within CCNA_00557 at 573.635 kb on - strand, within CCNA_00557 at 573.637 kb on + strand, within CCNA_00557 at 573.645 kb on - strand, within CCNA_00557 at 573.721 kb on - strand, within CCNA_00557 at 573.738 kb on + strand at 573.740 kb on - strand at 573.761 kb on + strand at 573.769 kb on - strand at 573.769 kb on - strand at 573.769 kb on - strand at 573.770 kb on + strand at 573.792 kb on + strand at 573.839 kb on - strand at 573.897 kb on + strand, within CCNA_00558 at 573.912 kb on + strand, within CCNA_00558 at 573.915 kb on - strand, within CCNA_00558 at 573.969 kb on + strand, within CCNA_00558 at 573.985 kb on - strand, within CCNA_00558 at 573.990 kb on - strand, within CCNA_00558 at 574.003 kb on - strand, within CCNA_00558 at 574.007 kb on + strand, within CCNA_00558 at 574.007 kb on + strand, within CCNA_00558 at 574.015 kb on - strand, within CCNA_00558 at 574.015 kb on - strand, within CCNA_00558 at 574.015 kb on - strand, within CCNA_00558 at 574.015 kb on - strand, within CCNA_00558 at 574.015 kb on - strand, within CCNA_00558 at 574.039 kb on + strand, within CCNA_00558 at 574.039 kb on + strand, within CCNA_00558 at 574.040 kb on + strand, within CCNA_00558 at 574.053 kb on - strand, within CCNA_00558
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 25C survival rep2 12 days remove 570,560 - CCNA_00554 0.40 -0.6 570,582 + CCNA_00554 0.43 -1.0 570,605 - CCNA_00554 0.45 -1.3 570,639 - CCNA_00554 0.50 -0.9 570,648 + CCNA_00554 0.51 -1.4 570,649 - CCNA_00554 0.51 -1.8 570,665 + CCNA_00554 0.53 -1.2 570,752 + CCNA_00554 0.64 -1.0 570,752 + CCNA_00554 0.64 -2.5 570,752 + CCNA_00554 0.64 -0.7 570,760 - CCNA_00554 0.65 -0.7 570,760 - CCNA_00554 0.65 -1.0 570,760 - CCNA_00554 0.65 -2.2 570,760 - CCNA_00554 0.65 +0.1 570,770 - CCNA_00554 0.66 -0.3 570,787 + CCNA_00554 0.68 -0.6 570,805 - CCNA_00554 0.70 -0.2 570,816 + CCNA_00554 0.72 +0.2 570,821 + CCNA_00554 0.72 -2.6 570,824 - CCNA_00554 0.73 -2.5 570,829 - CCNA_00554 0.73 +0.2 570,829 - CCNA_00554 0.73 -2.0 570,829 - CCNA_00554 0.73 -2.8 570,829 - CCNA_00554 0.73 -2.3 570,848 + CCNA_00554 0.76 -1.2 570,850 - CCNA_00554 0.76 +0.2 570,853 + CCNA_00554 0.76 -2.9 570,861 - CCNA_00554 0.77 -1.0 570,861 - CCNA_00554 0.77 -2.3 570,871 + CCNA_00554 0.78 -0.6 570,871 + CCNA_00554 0.78 -1.1 570,899 - CCNA_00554 0.82 -1.8 570,899 - CCNA_00554 0.82 -1.4 570,899 - CCNA_00554 0.82 +0.5 570,950 - CCNA_00554 0.88 -1.8 570,996 + -1.8 570,996 + +1.0 570,999 - -1.5 570,999 - -1.2 571,004 - -1.0 571,031 + -0.0 571,031 + +1.0 571,039 - +0.9 571,056 - +0.8 571,076 + +1.2 571,085 + +0.4 571,110 - -1.0 571,117 + -1.0 571,145 - +1.6 571,159 - CCNA_00555 0.12 +1.1 571,190 + CCNA_00555 0.21 -0.1 571,190 + CCNA_00555 0.21 +0.5 571,195 + CCNA_00555 0.23 +0.7 571,195 + CCNA_00555 0.23 +1.0 571,210 - CCNA_00555 0.27 +0.3 571,213 - CCNA_00555 0.28 +0.0 571,226 + CCNA_00555 0.32 +0.5 571,228 - CCNA_00555 0.32 +1.0 571,251 + CCNA_00555 0.39 +1.3 571,272 + CCNA_00555 0.45 +0.7 571,284 + CCNA_00555 0.48 +0.8 571,292 - CCNA_00555 0.51 +1.0 571,297 - CCNA_00555 0.52 +1.2 571,340 + CCNA_00555 0.65 +0.7 571,342 + CCNA_00555 0.65 +1.2 571,387 + CCNA_00555 0.78 +1.8 571,400 + CCNA_00555 0.82 +0.8 571,424 + CCNA_00555 0.89 +0.9 571,473 + +0.4 571,509 - -0.4 571,538 + +1.8 571,546 - +1.5 571,548 + +1.5 571,548 + +0.5 571,552 - +1.5 571,626 + -0.6 571,635 - -0.0 571,647 - -0.3 571,668 + -3.5 571,722 + CCNA_00556 0.12 -0.6 571,728 + CCNA_00556 0.12 -0.7 571,736 - CCNA_00556 0.13 -1.4 571,741 - CCNA_00556 0.13 -0.3 571,746 - CCNA_00556 0.13 -0.2 571,760 - CCNA_00556 0.14 -0.0 571,870 + CCNA_00556 0.21 -1.5 571,878 + CCNA_00556 0.22 -2.2 571,878 + CCNA_00556 0.22 -0.9 571,895 - CCNA_00556 0.23 -1.6 571,945 + CCNA_00556 0.26 -1.6 571,974 - CCNA_00556 0.28 -2.9 572,004 + CCNA_00556 0.30 +0.3 572,004 + CCNA_00556 0.30 +0.5 572,036 + CCNA_00556 0.32 +0.5 572,072 + CCNA_00556 0.35 +1.4 572,084 - CCNA_00556 0.35 -2.8 572,091 + CCNA_00556 0.36 -0.9 572,091 + CCNA_00556 0.36 -0.3 572,099 - CCNA_00556 0.36 -0.6 572,099 - CCNA_00556 0.36 -0.7 572,099 - CCNA_00556 0.36 +0.3 572,099 - CCNA_00556 0.36 -0.8 572,121 - CCNA_00556 0.38 -1.8 572,140 + CCNA_00556 0.39 -0.2 572,221 - CCNA_00556 0.44 +0.5 572,283 + CCNA_00556 0.49 -0.6 572,338 - CCNA_00556 0.52 -1.5 572,401 - CCNA_00556 0.56 -0.2 572,432 - CCNA_00556 0.58 -0.8 572,444 + CCNA_00556 0.59 -2.8 572,452 - CCNA_00556 0.60 -0.6 572,460 + CCNA_00556 0.60 -0.6 572,465 + CCNA_00556 0.61 -0.2 572,468 - CCNA_00556 0.61 -1.5 572,500 + CCNA_00556 0.63 -1.0 572,508 - CCNA_00556 0.63 -2.6 572,508 - CCNA_00556 0.63 -0.9 572,508 - CCNA_00556 0.63 -2.2 572,508 - CCNA_00556 0.63 -1.6 572,546 - CCNA_00556 0.66 -1.0 572,549 + CCNA_00556 0.66 -0.4 572,586 + CCNA_00556 0.69 +1.2 572,586 + CCNA_00556 0.69 +0.7 572,586 + CCNA_00556 0.69 -0.5 572,594 - CCNA_00556 0.69 -2.4 572,594 - CCNA_00556 0.69 +1.0 572,594 - CCNA_00556 0.69 -0.9 572,594 - CCNA_00556 0.69 -1.5 572,594 - CCNA_00556 0.69 -2.5 572,594 - CCNA_00556 0.69 -1.5 572,594 - CCNA_00556 0.69 -1.5 572,594 - CCNA_00556 0.69 -1.9 572,653 + CCNA_00556 0.73 -0.7 572,683 + CCNA_00556 0.75 -1.0 572,725 + CCNA_00556 0.78 -1.4 572,725 + CCNA_00556 0.78 -1.0 572,733 - CCNA_00556 0.78 -1.5 572,750 - CCNA_00556 0.79 +0.4 572,809 + CCNA_00556 0.83 -0.5 572,864 + CCNA_00556 0.87 -1.6 572,897 + CCNA_00556 0.89 -0.0 572,910 - CCNA_00556 0.90 -0.0 572,912 + -0.1 572,922 + -3.0 572,925 - +0.5 573,026 - -0.5 573,091 - +1.3 573,142 + CCNA_00557 0.16 +0.7 573,199 - CCNA_00557 0.23 +1.2 573,216 + CCNA_00557 0.25 -1.0 573,226 + CCNA_00557 0.26 +0.4 573,227 + CCNA_00557 0.27 +1.5 573,234 + CCNA_00557 0.27 +0.1 573,238 + CCNA_00557 0.28 +1.5 573,249 - CCNA_00557 0.29 +1.8 573,254 - CCNA_00557 0.30 +1.6 573,261 + CCNA_00557 0.31 -0.2 573,290 - CCNA_00557 0.35 +1.0 573,305 - CCNA_00557 0.37 -0.8 573,305 - CCNA_00557 0.37 +0.3 573,328 + CCNA_00557 0.39 +0.3 573,329 + CCNA_00557 0.40 +0.2 573,329 + CCNA_00557 0.40 +0.4 573,330 + CCNA_00557 0.40 +0.9 573,337 - CCNA_00557 0.41 +1.7 573,396 - CCNA_00557 0.48 +1.5 573,404 + CCNA_00557 0.49 +1.2 573,411 - CCNA_00557 0.50 +1.0 573,431 - CCNA_00557 0.53 +1.7 573,445 + CCNA_00557 0.54 -0.3 573,465 + CCNA_00557 0.57 -0.9 573,475 + CCNA_00557 0.58 +1.0 573,475 + CCNA_00557 0.58 -0.0 573,483 - CCNA_00557 0.59 +2.0 573,483 - CCNA_00557 0.59 -0.6 573,483 - CCNA_00557 0.59 +0.3 573,510 + CCNA_00557 0.63 -0.0 573,517 - CCNA_00557 0.64 +0.5 573,517 - CCNA_00557 0.64 +0.9 573,517 - CCNA_00557 0.64 +1.2 573,524 + CCNA_00557 0.65 +0.9 573,565 + CCNA_00557 0.70 +0.7 573,566 - CCNA_00557 0.70 +0.4 573,566 - CCNA_00557 0.70 +0.4 573,566 - CCNA_00557 0.70 +1.0 573,566 - CCNA_00557 0.70 +0.5 573,586 - CCNA_00557 0.73 +0.8 573,595 + CCNA_00557 0.74 +0.6 573,629 - CCNA_00557 0.78 +1.2 573,635 - CCNA_00557 0.79 +0.5 573,635 - CCNA_00557 0.79 +1.6 573,637 + CCNA_00557 0.79 +0.8 573,645 - CCNA_00557 0.80 +0.8 573,721 - CCNA_00557 0.90 +0.1 573,738 + -0.4 573,740 - +0.9 573,761 + +0.2 573,769 - +0.5 573,769 - +1.1 573,769 - +0.7 573,770 + +1.5 573,792 + +0.9 573,839 - +0.8 573,897 + CCNA_00558 0.15 +0.5 573,912 + CCNA_00558 0.17 -2.3 573,915 - CCNA_00558 0.18 -0.3 573,969 + CCNA_00558 0.26 +1.1 573,985 - CCNA_00558 0.28 -0.3 573,990 - CCNA_00558 0.29 +1.0 574,003 - CCNA_00558 0.31 +0.3 574,007 + CCNA_00558 0.32 -0.0 574,007 + CCNA_00558 0.32 -1.2 574,015 - CCNA_00558 0.33 -0.0 574,015 - CCNA_00558 0.33 -0.1 574,015 - CCNA_00558 0.33 +0.5 574,015 - CCNA_00558 0.33 -0.3 574,015 - CCNA_00558 0.33 +0.4 574,039 + CCNA_00558 0.36 +0.1 574,039 + CCNA_00558 0.36 -0.0 574,040 + CCNA_00558 0.37 -0.6 574,053 - CCNA_00558 0.39 +0.1
Or see this region's nucleotide sequence