Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00153

Experiment: PYE 25C survival rep2 12 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00152 and CCNA_00153 are separated by 12 nucleotidesCCNA_00153 and CCNA_00154 overlap by 61 nucleotidesCCNA_00154 and CCNA_00155 are separated by 177 nucleotides CCNA_00152: CCNA_00152 - winged helix-turn-helix transcription repressor HrcA, at 161,320 to 162,396 _00152 CCNA_00153: CCNA_00153 - adenine nucleotide exchange factor GrpE, at 162,409 to 163,035 _00153 CCNA_00154: CCNA_00154 - hypothetical protein, at 162,975 to 163,235 _00154 CCNA_00155: CCNA_00155 - DNA polymerase III, beta chain, at 163,413 to 164,531 _00155 Position (kb) 162 163 164Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 161.412 kb on + strandat 161.412 kb on + strandat 161.426 kb on + strandat 161.450 kb on - strand, within CCNA_00152at 161.452 kb on + strand, within CCNA_00152at 161.513 kb on - strand, within CCNA_00152at 161.515 kb on - strand, within CCNA_00152at 161.516 kb on + strand, within CCNA_00152at 161.552 kb on + strand, within CCNA_00152at 161.685 kb on + strand, within CCNA_00152at 161.685 kb on + strand, within CCNA_00152at 161.704 kb on - strand, within CCNA_00152at 161.705 kb on + strand, within CCNA_00152at 161.710 kb on + strand, within CCNA_00152at 161.713 kb on - strand, within CCNA_00152at 161.760 kb on + strand, within CCNA_00152at 161.782 kb on + strand, within CCNA_00152at 161.817 kb on + strand, within CCNA_00152at 161.841 kb on - strand, within CCNA_00152at 161.841 kb on - strand, within CCNA_00152at 161.866 kb on + strand, within CCNA_00152at 161.929 kb on - strand, within CCNA_00152at 161.959 kb on + strand, within CCNA_00152at 161.967 kb on - strand, within CCNA_00152at 162.025 kb on + strand, within CCNA_00152at 162.064 kb on - strand, within CCNA_00152at 162.075 kb on + strand, within CCNA_00152at 162.122 kb on + strand, within CCNA_00152at 162.140 kb on + strand, within CCNA_00152at 162.140 kb on + strand, within CCNA_00152at 162.147 kb on + strand, within CCNA_00152at 162.171 kb on + strand, within CCNA_00152at 162.171 kb on + strand, within CCNA_00152at 162.171 kb on + strand, within CCNA_00152at 162.171 kb on + strand, within CCNA_00152at 162.179 kb on - strand, within CCNA_00152at 162.239 kb on - strand, within CCNA_00152at 162.264 kb on + strand, within CCNA_00152at 162.267 kb on + strand, within CCNA_00152at 162.269 kb on + strand, within CCNA_00152at 162.340 kb on - strandat 162.347 kb on - strandat 162.354 kb on + strandat 162.392 kb on + strandat 162.392 kb on + strandat 162.392 kb on + strandat 162.405 kb on - strandat 162.937 kb on - strand, within CCNA_00153at 162.952 kb on - strand, within CCNA_00153at 162.972 kb on + strand, within CCNA_00153at 162.973 kb on - strandat 162.980 kb on - strandat 162.981 kb on - strandat 163.031 kb on - strandat 163.104 kb on + strand, within CCNA_00154at 163.112 kb on - strand, within CCNA_00154at 163.113 kb on - strand, within CCNA_00154at 163.117 kb on + strand, within CCNA_00154at 163.117 kb on + strandat 163.117 kb on + strand, within CCNA_00154at 163.158 kb on + strand, within CCNA_00154at 163.165 kb on + strand, within CCNA_00154at 163.171 kb on - strand, within CCNA_00154at 163.171 kb on - strand, within CCNA_00154at 163.178 kb on - strand, within CCNA_00154at 163.209 kb on + strand, within CCNA_00154at 163.209 kb on + strand, within CCNA_00154at 163.209 kb on + strand, within CCNA_00154at 163.209 kb on + strand, within CCNA_00154at 163.209 kb on + strand, within CCNA_00154at 163.209 kb on + strand, within CCNA_00154at 163.217 kb on - strandat 163.217 kb on - strandat 163.217 kb on - strandat 163.217 kb on - strandat 163.217 kb on - strandat 163.217 kb on - strandat 163.217 kb on - strandat 163.218 kb on + strandat 163.218 kb on + strandat 163.218 kb on + strandat 163.223 kb on + strandat 163.226 kb on - strandat 163.226 kb on - strandat 163.226 kb on - strandat 163.231 kb on - strandat 163.233 kb on + strandat 163.289 kb on - strandat 163.297 kb on - strandat 163.304 kb on - strandat 163.348 kb on + strandat 163.365 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE 25C survival rep2 12 days
remove
161,412 + -1.1
161,412 + -1.9
161,426 + -2.0
161,450 - CCNA_00152 0.12 -0.8
161,452 + CCNA_00152 0.12 -2.6
161,513 - CCNA_00152 0.18 +2.4
161,515 - CCNA_00152 0.18 +1.4
161,516 + CCNA_00152 0.18 -3.0
161,552 + CCNA_00152 0.22 -0.6
161,685 + CCNA_00152 0.34 -2.1
161,685 + CCNA_00152 0.34 -3.0
161,704 - CCNA_00152 0.36 -1.3
161,705 + CCNA_00152 0.36 -0.5
161,710 + CCNA_00152 0.36 -2.9
161,713 - CCNA_00152 0.36 -2.2
161,760 + CCNA_00152 0.41 -1.5
161,782 + CCNA_00152 0.43 -1.7
161,817 + CCNA_00152 0.46 -3.7
161,841 - CCNA_00152 0.48 +0.4
161,841 - CCNA_00152 0.48 +0.8
161,866 + CCNA_00152 0.51 -1.4
161,929 - CCNA_00152 0.57 +1.4
161,959 + CCNA_00152 0.59 -2.6
161,967 - CCNA_00152 0.60 -0.2
162,025 + CCNA_00152 0.65 -2.4
162,064 - CCNA_00152 0.69 -2.5
162,075 + CCNA_00152 0.70 -0.6
162,122 + CCNA_00152 0.74 -1.3
162,140 + CCNA_00152 0.76 -2.3
162,140 + CCNA_00152 0.76 +0.8
162,147 + CCNA_00152 0.77 -1.1
162,171 + CCNA_00152 0.79 -1.7
162,171 + CCNA_00152 0.79 +0.1
162,171 + CCNA_00152 0.79 -3.6
162,171 + CCNA_00152 0.79 +0.1
162,179 - CCNA_00152 0.80 -1.9
162,239 - CCNA_00152 0.85 -0.8
162,264 + CCNA_00152 0.88 -2.6
162,267 + CCNA_00152 0.88 -1.9
162,269 + CCNA_00152 0.88 -2.3
162,340 - -1.2
162,347 - -1.1
162,354 + -2.8
162,392 + -1.2
162,392 + +0.3
162,392 + +0.4
162,405 - -0.1
162,937 - CCNA_00153 0.84 -1.2
162,952 - CCNA_00153 0.87 -2.9
162,972 + CCNA_00153 0.90 -2.1
162,973 - -3.2
162,980 - -2.1
162,981 - -2.4
163,031 - +0.3
163,104 + CCNA_00154 0.49 +1.2
163,112 - CCNA_00154 0.52 -0.2
163,113 - CCNA_00154 0.53 -0.5
163,117 + CCNA_00154 0.54 +0.6
163,117 + +0.8
163,117 + CCNA_00154 0.54 -0.8
163,158 + CCNA_00154 0.70 +1.5
163,165 + CCNA_00154 0.73 -0.0
163,171 - CCNA_00154 0.75 -1.0
163,171 - CCNA_00154 0.75 +0.5
163,178 - CCNA_00154 0.78 -0.1
163,209 + CCNA_00154 0.90 +0.4
163,209 + CCNA_00154 0.90 -0.5
163,209 + CCNA_00154 0.90 -1.1
163,209 + CCNA_00154 0.90 -0.0
163,209 + CCNA_00154 0.90 -0.8
163,209 + CCNA_00154 0.90 -1.7
163,217 - -0.8
163,217 - -0.1
163,217 - -0.7
163,217 - -0.6
163,217 - +1.2
163,217 - -0.6
163,217 - -0.0
163,218 + +0.7
163,218 + -0.9
163,218 + -0.6
163,223 + -0.5
163,226 - +0.5
163,226 - +0.2
163,226 - -0.3
163,231 - +0.4
163,233 + -1.6
163,289 - -0.1
163,297 - -0.3
163,304 - -0.9
163,348 + -0.9
163,365 + -3.4

Or see this region's nucleotide sequence