Experiment: PYE 25C survival rep2 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00070 and CCNA_00071 are separated by 4 nucleotides CCNA_00071 and CCNA_00072 are separated by 43 nucleotides CCNA_00072 and CCNA_00073 overlap by 4 nucleotides
CCNA_00070: CCNA_00070 - porphobilinogen deaminase, at 71,977 to 72,945
_00070
CCNA_00071: CCNA_00071 - uroporphyrinogen-III synthase, at 72,950 to 73,636
_00071
CCNA_00072: CCNA_00072 - hypothetical protein, at 73,680 to 74,576
_00072
CCNA_00073: CCNA_00073 - HemY domain membrane protein, at 74,573 to 76,108
_00073
Position (kb) 72
73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 71.967 kb on + strand at 71.975 kb on - strand at 72.967 kb on + strand at 72.967 kb on + strand at 72.967 kb on + strand at 73.615 kb on + strand at 73.623 kb on - strand at 73.632 kb on - strand at 73.650 kb on - strand at 73.650 kb on - strand at 73.667 kb on - strand at 73.723 kb on + strand at 73.731 kb on + strand at 73.739 kb on - strand at 73.776 kb on + strand, within CCNA_00072 at 73.786 kb on + strand, within CCNA_00072 at 73.800 kb on + strand, within CCNA_00072 at 73.822 kb on + strand, within CCNA_00072 at 73.830 kb on - strand, within CCNA_00072 at 73.830 kb on - strand, within CCNA_00072 at 73.830 kb on - strand, within CCNA_00072 at 73.830 kb on - strand, within CCNA_00072 at 73.831 kb on - strand, within CCNA_00072 at 73.890 kb on - strand, within CCNA_00072 at 73.946 kb on + strand, within CCNA_00072 at 73.967 kb on - strand, within CCNA_00072 at 73.973 kb on + strand, within CCNA_00072 at 73.973 kb on + strand, within CCNA_00072 at 73.981 kb on - strand, within CCNA_00072 at 73.981 kb on - strand, within CCNA_00072 at 74.008 kb on + strand, within CCNA_00072 at 74.010 kb on + strand, within CCNA_00072 at 74.027 kb on + strand, within CCNA_00072 at 74.036 kb on - strand, within CCNA_00072 at 74.067 kb on + strand, within CCNA_00072 at 74.072 kb on + strand, within CCNA_00072 at 74.080 kb on - strand at 74.097 kb on - strand, within CCNA_00072 at 74.120 kb on - strand, within CCNA_00072 at 74.125 kb on + strand, within CCNA_00072 at 74.127 kb on - strand, within CCNA_00072 at 74.135 kb on + strand, within CCNA_00072 at 74.143 kb on + strand, within CCNA_00072 at 74.166 kb on - strand, within CCNA_00072 at 74.207 kb on - strand, within CCNA_00072 at 74.262 kb on - strand, within CCNA_00072 at 74.290 kb on + strand, within CCNA_00072 at 74.295 kb on + strand, within CCNA_00072 at 74.300 kb on + strand, within CCNA_00072 at 74.300 kb on + strand, within CCNA_00072 at 74.300 kb on + strand, within CCNA_00072 at 74.300 kb on + strand, within CCNA_00072 at 74.308 kb on - strand, within CCNA_00072 at 74.317 kb on - strand, within CCNA_00072 at 74.369 kb on + strand, within CCNA_00072 at 74.369 kb on + strand, within CCNA_00072 at 74.369 kb on + strand, within CCNA_00072 at 74.379 kb on + strand, within CCNA_00072 at 74.511 kb on - strand at 74.533 kb on + strand at 74.536 kb on - strand at 74.596 kb on + strand at 74.630 kb on + strand at 74.632 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 25C survival rep2 12 days remove 71,967 + -1.7 71,975 - -0.2 72,967 + -0.5 72,967 + +0.5 72,967 + -0.1 73,615 + -0.4 73,623 - -1.1 73,632 - -0.4 73,650 - -0.7 73,650 - -1.2 73,667 - -1.4 73,723 + -1.7 73,731 + +0.4 73,739 - -2.3 73,776 + CCNA_00072 0.11 -2.0 73,786 + CCNA_00072 0.12 -1.8 73,800 + CCNA_00072 0.13 -2.0 73,822 + CCNA_00072 0.16 -1.4 73,830 - CCNA_00072 0.17 -2.5 73,830 - CCNA_00072 0.17 -0.9 73,830 - CCNA_00072 0.17 -1.5 73,830 - CCNA_00072 0.17 -1.3 73,831 - CCNA_00072 0.17 -0.9 73,890 - CCNA_00072 0.23 -3.7 73,946 + CCNA_00072 0.30 -1.5 73,967 - CCNA_00072 0.32 -1.4 73,973 + CCNA_00072 0.33 -1.9 73,973 + CCNA_00072 0.33 -2.3 73,981 - CCNA_00072 0.34 -0.4 73,981 - CCNA_00072 0.34 -0.6 74,008 + CCNA_00072 0.37 -1.9 74,010 + CCNA_00072 0.37 -2.3 74,027 + CCNA_00072 0.39 -2.0 74,036 - CCNA_00072 0.40 -0.8 74,067 + CCNA_00072 0.43 -1.7 74,072 + CCNA_00072 0.44 -2.1 74,080 - -0.6 74,097 - CCNA_00072 0.46 -1.9 74,120 - CCNA_00072 0.49 -1.6 74,125 + CCNA_00072 0.50 -1.8 74,127 - CCNA_00072 0.50 -1.5 74,135 + CCNA_00072 0.51 -1.7 74,143 + CCNA_00072 0.52 -1.1 74,166 - CCNA_00072 0.54 -1.1 74,207 - CCNA_00072 0.59 -1.2 74,262 - CCNA_00072 0.65 -1.3 74,290 + CCNA_00072 0.68 -2.1 74,295 + CCNA_00072 0.69 -0.4 74,300 + CCNA_00072 0.69 -0.9 74,300 + CCNA_00072 0.69 -0.9 74,300 + CCNA_00072 0.69 -0.1 74,300 + CCNA_00072 0.69 -0.7 74,308 - CCNA_00072 0.70 -1.7 74,317 - CCNA_00072 0.71 -0.5 74,369 + CCNA_00072 0.77 -1.5 74,369 + CCNA_00072 0.77 -1.4 74,369 + CCNA_00072 0.77 -1.3 74,379 + CCNA_00072 0.78 -1.9 74,511 - -1.5 74,533 + -1.8 74,536 - +0.4 74,596 + -2.4 74,630 + -1.7 74,632 - -1.8
Or see this region's nucleotide sequence