Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23700 and BWI76_RS23705 are separated by 2 nucleotides BWI76_RS23705 and BWI76_RS23710 are separated by 11 nucleotides
BWI76_RS23700: BWI76_RS23700 - glycerate CoA-transferase (from data) , at 4,946,698 to 4,948,299
_RS23700
BWI76_RS23705: BWI76_RS23705 - 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) , at 4,948,302 to 4,949,036
_RS23705
BWI76_RS23710: BWI76_RS23710 - 3-keto-2-deoxy-D-ribonyl-CoA thiolase (from data) , at 4,949,048 to 4,950,238
_RS23710
Position (kb)
4948
4949
4950 Strain fitness (log2 ratio)
-1
0
1 at 4947.527 kb on + strand, within BWI76_RS23700 at 4947.527 kb on + strand, within BWI76_RS23700 at 4947.535 kb on - strand, within BWI76_RS23700 at 4947.686 kb on - strand, within BWI76_RS23700 at 4947.728 kb on + strand, within BWI76_RS23700 at 4947.760 kb on + strand, within BWI76_RS23700 at 4947.808 kb on - strand, within BWI76_RS23700 at 4948.120 kb on + strand, within BWI76_RS23700 at 4948.368 kb on - strand at 4948.502 kb on + strand, within BWI76_RS23705 at 4948.657 kb on + strand, within BWI76_RS23705 at 4949.140 kb on + strand at 4949.173 kb on - strand, within BWI76_RS23710 at 4949.429 kb on - strand, within BWI76_RS23710 at 4949.480 kb on + strand, within BWI76_RS23710 at 4949.754 kb on - strand, within BWI76_RS23710 at 4949.876 kb on + strand, within BWI76_RS23710 at 4950.029 kb on + strand, within BWI76_RS23710
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 4,947,527 + BWI76_RS23700 0.52 +0.4 4,947,527 + BWI76_RS23700 0.52 -0.4 4,947,535 - BWI76_RS23700 0.52 +0.7 4,947,686 - BWI76_RS23700 0.62 -0.3 4,947,728 + BWI76_RS23700 0.64 -0.3 4,947,760 + BWI76_RS23700 0.66 +0.0 4,947,808 - BWI76_RS23700 0.69 -0.1 4,948,120 + BWI76_RS23700 0.89 -0.0 4,948,368 - +1.1 4,948,502 + BWI76_RS23705 0.27 +0.2 4,948,657 + BWI76_RS23705 0.48 +0.7 4,949,140 + -0.1 4,949,173 - BWI76_RS23710 0.10 +0.4 4,949,429 - BWI76_RS23710 0.32 +1.1 4,949,480 + BWI76_RS23710 0.36 -0.4 4,949,754 - BWI76_RS23710 0.59 -0.2 4,949,876 + BWI76_RS23710 0.70 -0.0 4,950,029 + BWI76_RS23710 0.82 -0.0
Or see this region's nucleotide sequence