Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21360

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21355 and BWI76_RS21360 are separated by 423 nucleotidesBWI76_RS21360 and BWI76_RS21365 overlap by 16 nucleotidesBWI76_RS21365 and BWI76_RS21370 are separated by 132 nucleotides BWI76_RS21355: BWI76_RS21355 - RNA polymerase sigma factor RpoE, at 4,470,093 to 4,470,668 _RS21355 BWI76_RS21360: BWI76_RS21360 - L-aspartate oxidase, at 4,471,092 to 4,472,711 _RS21360 BWI76_RS21365: BWI76_RS21365 - tRNA (adenosine(37)-N6)-methyltransferase TrmM, at 4,472,696 to 4,473,436 _RS21365 BWI76_RS21370: BWI76_RS21370 - ATP-dependent RNA helicase SrmB, at 4,473,569 to 4,474,900 _RS21370 Position (kb) 4471 4472 4473Strain fitness (log2 ratio) -2 -1 0 1 2at 4470.738 kb on - strandat 4470.757 kb on - strandat 4471.004 kb on - strandat 4471.125 kb on - strandat 4471.130 kb on - strandat 4471.161 kb on + strandat 4471.170 kb on - strandat 4471.206 kb on + strandat 4471.249 kb on - strandat 4471.415 kb on - strand, within BWI76_RS21360at 4471.440 kb on + strand, within BWI76_RS21360at 4471.576 kb on + strand, within BWI76_RS21360at 4471.756 kb on - strand, within BWI76_RS21360at 4471.817 kb on + strand, within BWI76_RS21360at 4471.927 kb on - strand, within BWI76_RS21360at 4472.040 kb on - strand, within BWI76_RS21360at 4472.224 kb on + strand, within BWI76_RS21360at 4472.253 kb on + strand, within BWI76_RS21360at 4472.288 kb on - strand, within BWI76_RS21360at 4472.578 kb on + strandat 4472.625 kb on + strandat 4472.647 kb on + strandat 4472.655 kb on - strandat 4472.760 kb on - strandat 4473.262 kb on - strand, within BWI76_RS21365at 4473.297 kb on + strand, within BWI76_RS21365at 4473.297 kb on + strand, within BWI76_RS21365at 4473.297 kb on + strand, within BWI76_RS21365at 4473.305 kb on - strand, within BWI76_RS21365at 4473.395 kb on + strandat 4473.469 kb on + strandat 4473.476 kb on + strandat 4473.477 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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4,470,738 - -0.1
4,470,757 - +0.4
4,471,004 - +1.7
4,471,125 - -0.8
4,471,130 - -1.5
4,471,161 + -0.3
4,471,170 - -0.6
4,471,206 + -1.2
4,471,249 - -0.5
4,471,415 - BWI76_RS21360 0.20 -1.4
4,471,440 + BWI76_RS21360 0.21 -0.5
4,471,576 + BWI76_RS21360 0.30 -0.7
4,471,756 - BWI76_RS21360 0.41 -0.8
4,471,817 + BWI76_RS21360 0.45 -0.1
4,471,927 - BWI76_RS21360 0.52 -0.6
4,472,040 - BWI76_RS21360 0.59 +0.2
4,472,224 + BWI76_RS21360 0.70 -0.7
4,472,253 + BWI76_RS21360 0.72 -0.9
4,472,288 - BWI76_RS21360 0.74 -1.3
4,472,578 + -1.6
4,472,625 + -2.6
4,472,647 + -1.0
4,472,655 - -0.6
4,472,760 - +0.6
4,473,262 - BWI76_RS21365 0.76 +0.2
4,473,297 + BWI76_RS21365 0.81 +0.6
4,473,297 + BWI76_RS21365 0.81 +2.4
4,473,297 + BWI76_RS21365 0.81 -0.1
4,473,305 - BWI76_RS21365 0.82 +0.1
4,473,395 + -0.0
4,473,469 + +2.2
4,473,476 + -0.4
4,473,477 - +0.1

Or see this region's nucleotide sequence