Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21355 and BWI76_RS21360 are separated by 423 nucleotides BWI76_RS21360 and BWI76_RS21365 overlap by 16 nucleotides BWI76_RS21365 and BWI76_RS21370 are separated by 132 nucleotides
BWI76_RS21355: BWI76_RS21355 - RNA polymerase sigma factor RpoE, at 4,470,093 to 4,470,668
_RS21355
BWI76_RS21360: BWI76_RS21360 - L-aspartate oxidase, at 4,471,092 to 4,472,711
_RS21360
BWI76_RS21365: BWI76_RS21365 - tRNA (adenosine(37)-N6)-methyltransferase TrmM, at 4,472,696 to 4,473,436
_RS21365
BWI76_RS21370: BWI76_RS21370 - ATP-dependent RNA helicase SrmB, at 4,473,569 to 4,474,900
_RS21370
Position (kb)
4471
4472
4473 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4470.738 kb on - strand at 4470.757 kb on - strand at 4471.004 kb on - strand at 4471.125 kb on - strand at 4471.130 kb on - strand at 4471.161 kb on + strand at 4471.170 kb on - strand at 4471.206 kb on + strand at 4471.249 kb on - strand at 4471.415 kb on - strand, within BWI76_RS21360 at 4471.440 kb on + strand, within BWI76_RS21360 at 4471.576 kb on + strand, within BWI76_RS21360 at 4471.756 kb on - strand, within BWI76_RS21360 at 4471.817 kb on + strand, within BWI76_RS21360 at 4471.927 kb on - strand, within BWI76_RS21360 at 4472.040 kb on - strand, within BWI76_RS21360 at 4472.224 kb on + strand, within BWI76_RS21360 at 4472.253 kb on + strand, within BWI76_RS21360 at 4472.288 kb on - strand, within BWI76_RS21360 at 4472.578 kb on + strand at 4472.625 kb on + strand at 4472.647 kb on + strand at 4472.655 kb on - strand at 4472.760 kb on - strand at 4473.262 kb on - strand, within BWI76_RS21365 at 4473.297 kb on + strand, within BWI76_RS21365 at 4473.297 kb on + strand, within BWI76_RS21365 at 4473.297 kb on + strand, within BWI76_RS21365 at 4473.305 kb on - strand, within BWI76_RS21365 at 4473.395 kb on + strand at 4473.469 kb on + strand at 4473.476 kb on + strand at 4473.477 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 4,470,738 - -0.1 4,470,757 - +0.4 4,471,004 - +1.7 4,471,125 - -0.8 4,471,130 - -1.5 4,471,161 + -0.3 4,471,170 - -0.6 4,471,206 + -1.2 4,471,249 - -0.5 4,471,415 - BWI76_RS21360 0.20 -1.4 4,471,440 + BWI76_RS21360 0.21 -0.5 4,471,576 + BWI76_RS21360 0.30 -0.7 4,471,756 - BWI76_RS21360 0.41 -0.8 4,471,817 + BWI76_RS21360 0.45 -0.1 4,471,927 - BWI76_RS21360 0.52 -0.6 4,472,040 - BWI76_RS21360 0.59 +0.2 4,472,224 + BWI76_RS21360 0.70 -0.7 4,472,253 + BWI76_RS21360 0.72 -0.9 4,472,288 - BWI76_RS21360 0.74 -1.3 4,472,578 + -1.6 4,472,625 + -2.6 4,472,647 + -1.0 4,472,655 - -0.6 4,472,760 - +0.6 4,473,262 - BWI76_RS21365 0.76 +0.2 4,473,297 + BWI76_RS21365 0.81 +0.6 4,473,297 + BWI76_RS21365 0.81 +2.4 4,473,297 + BWI76_RS21365 0.81 -0.1 4,473,305 - BWI76_RS21365 0.82 +0.1 4,473,395 + -0.0 4,473,469 + +2.2 4,473,476 + -0.4 4,473,477 - +0.1
Or see this region's nucleotide sequence