Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19870

Experiment: Cytidine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS19860 and BWI76_RS19865 are separated by 338 nucleotidesBWI76_RS19865 and BWI76_RS19870 are separated by 42 nucleotidesBWI76_RS19870 and BWI76_RS19875 are separated by 279 nucleotides BWI76_RS19860: BWI76_RS19860 - hypothetical protein, at 4,152,369 to 4,152,791 _RS19860 BWI76_RS19865: BWI76_RS19865 - ecotin, at 4,153,130 to 4,153,621 _RS19865 BWI76_RS19870: BWI76_RS19870 - malate:quinone oxidoreductase, at 4,153,664 to 4,155,298 _RS19870 BWI76_RS19875: BWI76_RS19875 - sulfate transporter, at 4,155,578 to 4,156,825 _RS19875 Position (kb) 4153 4154 4155 4156Strain fitness (log2 ratio) -2 -1 0 1at 4153.005 kb on + strandat 4153.011 kb on - strandat 4153.060 kb on + strandat 4153.062 kb on + strandat 4153.163 kb on - strandat 4153.249 kb on - strand, within BWI76_RS19865at 4153.396 kb on - strand, within BWI76_RS19865at 4153.396 kb on - strand, within BWI76_RS19865at 4153.607 kb on + strandat 4154.199 kb on + strand, within BWI76_RS19870at 4154.541 kb on - strand, within BWI76_RS19870at 4154.588 kb on + strandat 4154.888 kb on + strand, within BWI76_RS19870at 4155.036 kb on + strand, within BWI76_RS19870at 4155.053 kb on - strand, within BWI76_RS19870at 4155.273 kb on - strandat 4155.650 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
remove
4,153,005 + -0.3
4,153,011 - -0.1
4,153,060 + -0.2
4,153,062 + -0.4
4,153,163 - -0.2
4,153,249 - BWI76_RS19865 0.24 +0.6
4,153,396 - BWI76_RS19865 0.54 -0.6
4,153,396 - BWI76_RS19865 0.54 -1.4
4,153,607 + +0.3
4,154,199 + BWI76_RS19870 0.33 -2.1
4,154,541 - BWI76_RS19870 0.54 -0.9
4,154,588 + +0.5
4,154,888 + BWI76_RS19870 0.75 -2.0
4,155,036 + BWI76_RS19870 0.84 -0.2
4,155,053 - BWI76_RS19870 0.85 +1.2
4,155,273 - -1.5
4,155,650 + +0.7

Or see this region's nucleotide sequence