Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14845

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14835 and BWI76_RS14840 are separated by 180 nucleotidesBWI76_RS14840 and BWI76_RS14845 are separated by 208 nucleotidesBWI76_RS14845 and BWI76_RS14850 are separated by 366 nucleotides BWI76_RS14835: BWI76_RS14835 - hypothetical protein, at 3,108,038 to 3,108,430 _RS14835 BWI76_RS14840: BWI76_RS14840 - hypothetical protein, at 3,108,611 to 3,109,213 _RS14840 BWI76_RS14845: BWI76_RS14845 - hypothetical protein, at 3,109,422 to 3,110,048 _RS14845 BWI76_RS14850: BWI76_RS14850 - LacI family transcriptional regulator, at 3,110,415 to 3,111,446 _RS14850 Position (kb) 3109 3110 3111Strain fitness (log2 ratio) -2 -1 0 1 2at 3108.425 kb on + strandat 3108.594 kb on - strandat 3108.726 kb on - strand, within BWI76_RS14840at 3108.847 kb on - strand, within BWI76_RS14840at 3109.135 kb on + strand, within BWI76_RS14840at 3109.175 kb on - strandat 3109.240 kb on + strandat 3109.361 kb on - strandat 3109.674 kb on - strand, within BWI76_RS14845at 3109.679 kb on - strand, within BWI76_RS14845at 3109.803 kb on - strand, within BWI76_RS14845at 3110.173 kb on - strandat 3110.219 kb on + strandat 3110.219 kb on + strandat 3110.219 kb on + strandat 3110.826 kb on - strand, within BWI76_RS14850at 3110.991 kb on - strand, within BWI76_RS14850at 3111.013 kb on - strand, within BWI76_RS14850

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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3,108,425 + +0.3
3,108,594 - +0.2
3,108,726 - BWI76_RS14840 0.19 +0.1
3,108,847 - BWI76_RS14840 0.39 +0.3
3,109,135 + BWI76_RS14840 0.87 -0.0
3,109,175 - +0.4
3,109,240 + -2.1
3,109,361 - -0.8
3,109,674 - BWI76_RS14845 0.40 +1.8
3,109,679 - BWI76_RS14845 0.41 +0.2
3,109,803 - BWI76_RS14845 0.61 +0.7
3,110,173 - +0.2
3,110,219 + -0.0
3,110,219 + +0.5
3,110,219 + -0.3
3,110,826 - BWI76_RS14850 0.40 -0.4
3,110,991 - BWI76_RS14850 0.56 -0.7
3,111,013 - BWI76_RS14850 0.58 +0.1

Or see this region's nucleotide sequence