Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12540 and BWI76_RS12545 are separated by 63 nucleotides BWI76_RS12545 and BWI76_RS12550 are separated by 14 nucleotides BWI76_RS12550 and BWI76_RS12555 overlap by 4 nucleotides
BWI76_RS12540: BWI76_RS12540 - maltoporin, at 2,619,567 to 2,620,943
_RS12540
BWI76_RS12545: BWI76_RS12545 - hypothetical protein, at 2,621,007 to 2,621,966
_RS12545
BWI76_RS12550: BWI76_RS12550 - hypothetical protein, at 2,621,981 to 2,622,514
_RS12550
BWI76_RS12555: BWI76_RS12555 - hypothetical protein, at 2,622,511 to 2,623,035
_RS12555
Position (kb)
2621
2622 Strain fitness (log2 ratio)
-1
0
1
2 at 2620.552 kb on + strand, within BWI76_RS12540 at 2620.552 kb on + strand, within BWI76_RS12540 at 2621.035 kb on - strand at 2621.048 kb on + strand at 2621.120 kb on + strand, within BWI76_RS12545 at 2621.475 kb on - strand, within BWI76_RS12545 at 2621.475 kb on - strand, within BWI76_RS12545 at 2622.111 kb on + strand, within BWI76_RS12550 at 2622.264 kb on - strand, within BWI76_RS12550 at 2622.699 kb on - strand, within BWI76_RS12555 at 2622.699 kb on - strand, within BWI76_RS12555 at 2622.806 kb on + strand, within BWI76_RS12555 at 2622.814 kb on - strand, within BWI76_RS12555 at 2622.838 kb on - strand, within BWI76_RS12555
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 2,620,552 + BWI76_RS12540 0.72 -0.0 2,620,552 + BWI76_RS12540 0.72 -0.7 2,621,035 - +0.7 2,621,048 + +0.6 2,621,120 + BWI76_RS12545 0.12 +0.3 2,621,475 - BWI76_RS12545 0.49 -0.1 2,621,475 - BWI76_RS12545 0.49 +2.1 2,622,111 + BWI76_RS12550 0.24 -0.2 2,622,264 - BWI76_RS12550 0.53 +0.4 2,622,699 - BWI76_RS12555 0.36 +0.0 2,622,699 - BWI76_RS12555 0.36 +0.0 2,622,806 + BWI76_RS12555 0.56 +0.4 2,622,814 - BWI76_RS12555 0.58 -0.0 2,622,838 - BWI76_RS12555 0.62 +0.2
Or see this region's nucleotide sequence