Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11640 and BWI76_RS11645 overlap by 28 nucleotides BWI76_RS11645 and BWI76_RS11650 are separated by 9 nucleotides BWI76_RS11650 and BWI76_RS11655 overlap by 4 nucleotides
BWI76_RS11640: BWI76_RS11640 - ABC transporter membrane protein, at 2,448,851 to 2,450,386
_RS11640
BWI76_RS11645: BWI76_RS11645 - ABC transporter substrate-binding protein, at 2,450,359 to 2,451,519
_RS11645
BWI76_RS11650: BWI76_RS11650 - carboxymuconolactone decarboxylase family protein, at 2,451,529 to 2,452,080
_RS11650
BWI76_RS11655: BWI76_RS11655 - TVP38/TMEM64 family protein, at 2,452,077 to 2,452,775
_RS11655
Position (kb)
2450
2451
2452 Strain fitness (log2 ratio)
-1
0
1 at 2449.978 kb on + strand, within BWI76_RS11640 at 2449.986 kb on - strand, within BWI76_RS11640 at 2450.218 kb on - strand, within BWI76_RS11640 at 2450.364 kb on - strand at 2450.459 kb on - strand at 2450.526 kb on - strand, within BWI76_RS11645 at 2450.721 kb on + strand, within BWI76_RS11645 at 2450.729 kb on + strand, within BWI76_RS11645 at 2452.180 kb on - strand, within BWI76_RS11655 at 2452.253 kb on + strand, within BWI76_RS11655 at 2452.253 kb on + strand, within BWI76_RS11655 at 2452.303 kb on + strand, within BWI76_RS11655 at 2452.454 kb on + strand, within BWI76_RS11655 at 2452.477 kb on + strand, within BWI76_RS11655
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 2,449,978 + BWI76_RS11640 0.73 +0.3 2,449,986 - BWI76_RS11640 0.74 +1.3 2,450,218 - BWI76_RS11640 0.89 -0.5 2,450,364 - -0.8 2,450,459 - +0.9 2,450,526 - BWI76_RS11645 0.14 -0.1 2,450,721 + BWI76_RS11645 0.31 +0.6 2,450,729 + BWI76_RS11645 0.32 +0.8 2,452,180 - BWI76_RS11655 0.15 +0.0 2,452,253 + BWI76_RS11655 0.25 +0.5 2,452,253 + BWI76_RS11655 0.25 -0.1 2,452,303 + BWI76_RS11655 0.32 +0.3 2,452,454 + BWI76_RS11655 0.54 -0.2 2,452,477 + BWI76_RS11655 0.57 -0.2
Or see this region's nucleotide sequence