Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10750

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10740 and BWI76_RS10745 are separated by 374 nucleotidesBWI76_RS10745 and BWI76_RS10750 are separated by 258 nucleotidesBWI76_RS10750 and BWI76_RS10755 are separated by 21 nucleotidesBWI76_RS10755 and BWI76_RS10760 are separated by 9 nucleotides BWI76_RS10740: BWI76_RS10740 - NAD(P)H:quinone oxidoreductase, at 2,269,105 to 2,269,701 _RS10740 BWI76_RS10745: BWI76_RS10745 - hypothetical protein, at 2,270,076 to 2,270,249 _RS10745 BWI76_RS10750: BWI76_RS10750 - pyrimidine utilization transport protein G, at 2,270,508 to 2,271,830 _RS10750 BWI76_RS10755: BWI76_RS10755 - pyrimidine utilization flavin reductase protein F, at 2,271,852 to 2,272,346 _RS10755 BWI76_RS10760: BWI76_RS10760 - nitroreductase family protein, at 2,272,356 to 2,272,946 _RS10760 Position (kb) 2270 2271 2272Strain fitness (log2 ratio) -2 -1 0 1at 2269.610 kb on - strand, within BWI76_RS10740at 2269.634 kb on - strand, within BWI76_RS10740at 2269.652 kb on + strandat 2269.881 kb on - strandat 2269.988 kb on - strandat 2270.016 kb on + strandat 2270.024 kb on - strandat 2270.035 kb on + strandat 2270.159 kb on - strand, within BWI76_RS10745at 2270.275 kb on + strandat 2270.282 kb on - strandat 2270.551 kb on + strandat 2270.668 kb on + strand, within BWI76_RS10750at 2270.714 kb on - strand, within BWI76_RS10750at 2270.872 kb on - strand, within BWI76_RS10750at 2271.104 kb on - strand, within BWI76_RS10750at 2271.359 kb on + strand, within BWI76_RS10750at 2271.479 kb on + strand, within BWI76_RS10750at 2271.499 kb on + strand, within BWI76_RS10750at 2271.507 kb on - strand, within BWI76_RS10750at 2271.852 kb on - strandat 2271.911 kb on + strand, within BWI76_RS10755at 2272.362 kb on - strandat 2272.685 kb on - strand, within BWI76_RS10760at 2272.734 kb on + strand, within BWI76_RS10760at 2272.741 kb on + strand, within BWI76_RS10760at 2272.742 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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2,269,610 - BWI76_RS10740 0.85 +0.1
2,269,634 - BWI76_RS10740 0.89 +0.5
2,269,652 + -0.2
2,269,881 - +0.1
2,269,988 - -0.7
2,270,016 + +0.6
2,270,024 - +0.6
2,270,035 + +0.2
2,270,159 - BWI76_RS10745 0.48 +0.0
2,270,275 + -0.5
2,270,282 - +1.2
2,270,551 + +0.4
2,270,668 + BWI76_RS10750 0.12 +0.2
2,270,714 - BWI76_RS10750 0.16 +0.2
2,270,872 - BWI76_RS10750 0.28 -1.3
2,271,104 - BWI76_RS10750 0.45 -0.6
2,271,359 + BWI76_RS10750 0.64 +0.7
2,271,479 + BWI76_RS10750 0.73 -1.7
2,271,499 + BWI76_RS10750 0.75 -0.5
2,271,507 - BWI76_RS10750 0.76 -2.1
2,271,852 - -0.9
2,271,911 + BWI76_RS10755 0.12 -1.7
2,272,362 - -1.1
2,272,685 - BWI76_RS10760 0.56 -1.2
2,272,734 + BWI76_RS10760 0.64 -1.8
2,272,741 + BWI76_RS10760 0.65 -1.1
2,272,742 - -0.2

Or see this region's nucleotide sequence