Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09580

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09570 and BWI76_RS09575 are separated by 34 nucleotidesBWI76_RS09575 and BWI76_RS09580 overlap by 93 nucleotidesBWI76_RS09580 and BWI76_RS09585 are separated by 124 nucleotides BWI76_RS09570: BWI76_RS09570 - hydroxylamine reductase, at 2,001,748 to 2,003,400 _RS09570 BWI76_RS09575: BWI76_RS09575 - hypothetical protein, at 2,003,435 to 2,003,638 _RS09575 BWI76_RS09580: BWI76_RS09580 - surface protein, at 2,003,546 to 2,004,445 _RS09580 BWI76_RS09585: BWI76_RS09585 - aquaporin, at 2,004,570 to 2,005,265 _RS09585 Position (kb) 2003 2004 2005Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2002.592 kb on + strand, within BWI76_RS09570at 2002.643 kb on + strand, within BWI76_RS09570at 2002.668 kb on + strand, within BWI76_RS09570at 2002.859 kb on + strand, within BWI76_RS09570at 2003.335 kb on - strandat 2003.350 kb on + strandat 2003.373 kb on + strandat 2003.799 kb on - strand, within BWI76_RS09580at 2003.889 kb on - strand, within BWI76_RS09580at 2003.908 kb on + strand, within BWI76_RS09580at 2003.908 kb on + strand, within BWI76_RS09580at 2003.916 kb on - strand, within BWI76_RS09580at 2003.916 kb on - strand, within BWI76_RS09580at 2003.926 kb on - strand, within BWI76_RS09580at 2003.974 kb on + strand, within BWI76_RS09580at 2003.995 kb on + strand, within BWI76_RS09580at 2003.995 kb on + strand, within BWI76_RS09580at 2004.003 kb on - strand, within BWI76_RS09580at 2004.003 kb on - strand, within BWI76_RS09580at 2004.108 kb on + strand, within BWI76_RS09580at 2004.116 kb on - strand, within BWI76_RS09580at 2004.116 kb on - strand, within BWI76_RS09580at 2004.123 kb on - strand, within BWI76_RS09580at 2004.198 kb on + strand, within BWI76_RS09580at 2004.198 kb on + strand, within BWI76_RS09580at 2004.203 kb on + strand, within BWI76_RS09580at 2004.206 kb on - strand, within BWI76_RS09580at 2004.206 kb on - strand, within BWI76_RS09580at 2004.226 kb on + strand, within BWI76_RS09580at 2004.231 kb on + strand, within BWI76_RS09580at 2004.307 kb on - strand, within BWI76_RS09580at 2004.372 kb on + strandat 2004.391 kb on + strandat 2004.401 kb on + strandat 2004.402 kb on + strandat 2004.416 kb on - strandat 2004.507 kb on + strandat 2004.507 kb on + strandat 2004.507 kb on + strandat 2004.507 kb on + strandat 2004.515 kb on - strandat 2004.515 kb on - strandat 2004.515 kb on - strandat 2004.590 kb on + strandat 2004.592 kb on + strandat 2004.598 kb on - strandat 2004.645 kb on - strand, within BWI76_RS09585at 2004.746 kb on + strand, within BWI76_RS09585at 2004.840 kb on + strand, within BWI76_RS09585at 2004.840 kb on + strand, within BWI76_RS09585at 2004.840 kb on + strand, within BWI76_RS09585at 2004.848 kb on - strand, within BWI76_RS09585at 2004.901 kb on + strand, within BWI76_RS09585at 2004.901 kb on + strand, within BWI76_RS09585at 2004.936 kb on + strand, within BWI76_RS09585at 2004.942 kb on - strand, within BWI76_RS09585at 2004.965 kb on - strand, within BWI76_RS09585at 2004.965 kb on - strand, within BWI76_RS09585at 2004.966 kb on + strand, within BWI76_RS09585at 2004.974 kb on - strand, within BWI76_RS09585at 2004.979 kb on - strand, within BWI76_RS09585at 2005.059 kb on + strand, within BWI76_RS09585at 2005.061 kb on - strand, within BWI76_RS09585at 2005.066 kb on - strand, within BWI76_RS09585at 2005.113 kb on + strand, within BWI76_RS09585at 2005.113 kb on + strand, within BWI76_RS09585at 2005.113 kb on + strand, within BWI76_RS09585at 2005.113 kb on + strand, within BWI76_RS09585at 2005.121 kb on - strand, within BWI76_RS09585at 2005.143 kb on - strand, within BWI76_RS09585at 2005.179 kb on + strand, within BWI76_RS09585at 2005.183 kb on + strand, within BWI76_RS09585at 2005.211 kb on - strandat 2005.212 kb on + strandat 2005.247 kb on - strandat 2005.247 kb on - strandat 2005.350 kb on - strandat 2005.360 kb on - strandat 2005.371 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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2,002,592 + BWI76_RS09570 0.51 +0.8
2,002,643 + BWI76_RS09570 0.54 +0.3
2,002,668 + BWI76_RS09570 0.56 +0.0
2,002,859 + BWI76_RS09570 0.67 -0.8
2,003,335 - +0.8
2,003,350 + +0.4
2,003,373 + +0.1
2,003,799 - BWI76_RS09580 0.28 -0.5
2,003,889 - BWI76_RS09580 0.38 -2.6
2,003,908 + BWI76_RS09580 0.40 -2.7
2,003,908 + BWI76_RS09580 0.40 -2.1
2,003,916 - BWI76_RS09580 0.41 -2.6
2,003,916 - BWI76_RS09580 0.41 -1.8
2,003,926 - BWI76_RS09580 0.42 -1.4
2,003,974 + BWI76_RS09580 0.48 -1.5
2,003,995 + BWI76_RS09580 0.50 -1.9
2,003,995 + BWI76_RS09580 0.50 -1.6
2,004,003 - BWI76_RS09580 0.51 -1.9
2,004,003 - BWI76_RS09580 0.51 -1.9
2,004,108 + BWI76_RS09580 0.62 -3.1
2,004,116 - BWI76_RS09580 0.63 -1.5
2,004,116 - BWI76_RS09580 0.63 -1.9
2,004,123 - BWI76_RS09580 0.64 -1.4
2,004,198 + BWI76_RS09580 0.72 -2.1
2,004,198 + BWI76_RS09580 0.72 +1.9
2,004,203 + BWI76_RS09580 0.73 -1.6
2,004,206 - BWI76_RS09580 0.73 -1.8
2,004,206 - BWI76_RS09580 0.73 -2.0
2,004,226 + BWI76_RS09580 0.76 -0.6
2,004,231 + BWI76_RS09580 0.76 -1.6
2,004,307 - BWI76_RS09580 0.85 -2.0
2,004,372 + -0.6
2,004,391 + -1.6
2,004,401 + -1.9
2,004,402 + -2.2
2,004,416 - -1.8
2,004,507 + +0.4
2,004,507 + +0.3
2,004,507 + -0.4
2,004,507 + +1.0
2,004,515 - +0.4
2,004,515 - -1.1
2,004,515 - -0.0
2,004,590 + -0.5
2,004,592 + +0.9
2,004,598 - +0.1
2,004,645 - BWI76_RS09585 0.11 +0.1
2,004,746 + BWI76_RS09585 0.25 +0.2
2,004,840 + BWI76_RS09585 0.39 +0.1
2,004,840 + BWI76_RS09585 0.39 +0.2
2,004,840 + BWI76_RS09585 0.39 +0.7
2,004,848 - BWI76_RS09585 0.40 +0.2
2,004,901 + BWI76_RS09585 0.48 +0.4
2,004,901 + BWI76_RS09585 0.48 +0.2
2,004,936 + BWI76_RS09585 0.53 +0.0
2,004,942 - BWI76_RS09585 0.53 -0.2
2,004,965 - BWI76_RS09585 0.57 -0.0
2,004,965 - BWI76_RS09585 0.57 -0.9
2,004,966 + BWI76_RS09585 0.57 +0.8
2,004,974 - BWI76_RS09585 0.58 +0.1
2,004,979 - BWI76_RS09585 0.59 -0.2
2,005,059 + BWI76_RS09585 0.70 +0.1
2,005,061 - BWI76_RS09585 0.71 +0.3
2,005,066 - BWI76_RS09585 0.71 -0.2
2,005,113 + BWI76_RS09585 0.78 -0.3
2,005,113 + BWI76_RS09585 0.78 +0.5
2,005,113 + BWI76_RS09585 0.78 +1.0
2,005,113 + BWI76_RS09585 0.78 +0.7
2,005,121 - BWI76_RS09585 0.79 -0.2
2,005,143 - BWI76_RS09585 0.82 -0.7
2,005,179 + BWI76_RS09585 0.88 +0.5
2,005,183 + BWI76_RS09585 0.88 -1.1
2,005,211 - -0.5
2,005,212 + +0.3
2,005,247 - +1.1
2,005,247 - -1.1
2,005,350 - -0.6
2,005,360 - +0.1
2,005,371 + +0.0

Or see this region's nucleotide sequence