Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3135

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3134 and DvMF_3135 are separated by 257 nucleotidesDvMF_3135 and DvMF_3136 overlap by 4 nucleotides DvMF_3134: DvMF_3134 - protein of unknown function DUF21 (RefSeq), at 3,953,875 to 3,954,912 _3134 DvMF_3135: DvMF_3135 - histidinol-phosphate phosphatase family protein (RefSeq), at 3,955,170 to 3,955,871 _3135 DvMF_3136: DvMF_3136 - lipopolysaccharide heptosyltransferase II (RefSeq), at 3,955,868 to 3,956,902 _3136 Position (kb) 3955 3956Strain fitness (log2 ratio) -1 0 1 2at 3954.263 kb on + strand, within DvMF_3134at 3954.389 kb on + strand, within DvMF_3134at 3954.576 kb on + strand, within DvMF_3134at 3954.606 kb on + strand, within DvMF_3134at 3954.614 kb on - strand, within DvMF_3134at 3954.726 kb on - strand, within DvMF_3134at 3954.841 kb on - strandat 3954.913 kb on + strandat 3954.913 kb on + strandat 3954.913 kb on + strandat 3955.047 kb on - strandat 3955.118 kb on - strandat 3955.118 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,954,263 + DvMF_3134 0.37 +1.0
3,954,389 + DvMF_3134 0.50 +0.6
3,954,576 + DvMF_3134 0.68 -0.0
3,954,606 + DvMF_3134 0.70 +2.2
3,954,614 - DvMF_3134 0.71 +0.5
3,954,726 - DvMF_3134 0.82 +0.3
3,954,841 - +0.3
3,954,913 + +0.3
3,954,913 + -0.4
3,954,913 + -0.6
3,955,047 - -0.1
3,955,118 - +0.2
3,955,118 - -0.1

Or see this region's nucleotide sequence