Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3072

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3071 and DvMF_3072 are separated by 550 nucleotidesDvMF_3072 and DvMF_3073 are separated by 321 nucleotides DvMF_3071: DvMF_3071 - type IV pilus assembly PilZ (RefSeq), at 3,876,615 to 3,877,106 _3071 DvMF_3072: DvMF_3072 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,877,657 to 3,879,486 _3072 DvMF_3073: DvMF_3073 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,879,808 to 3,881,841 _3073 Position (kb) 3877 3878 3879 3880Strain fitness (log2 ratio) -1 0 1at 3876.865 kb on + strand, within DvMF_3071at 3877.263 kb on + strandat 3877.271 kb on - strandat 3877.577 kb on + strandat 3877.689 kb on + strandat 3877.977 kb on - strand, within DvMF_3072at 3878.237 kb on + strand, within DvMF_3072at 3878.775 kb on + strand, within DvMF_3072at 3878.971 kb on - strand, within DvMF_3072at 3879.115 kb on - strand, within DvMF_3072at 3879.222 kb on + strand, within DvMF_3072at 3879.361 kb on - strandat 3879.531 kb on + strandat 3879.538 kb on + strandat 3879.617 kb on + strandat 3879.889 kb on + strandat 3879.897 kb on - strandat 3879.897 kb on - strandat 3879.937 kb on + strandat 3880.135 kb on + strand, within DvMF_3073at 3880.355 kb on + strand, within DvMF_3073at 3880.381 kb on - strand, within DvMF_3073at 3880.461 kb on - strand, within DvMF_3073at 3880.471 kb on + strand, within DvMF_3073at 3880.471 kb on - strand, within DvMF_3073

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,876,865 + DvMF_3071 0.51 -0.2
3,877,263 + +0.5
3,877,271 - +0.6
3,877,577 + +0.9
3,877,689 + +0.9
3,877,977 - DvMF_3072 0.17 +0.2
3,878,237 + DvMF_3072 0.32 +0.5
3,878,775 + DvMF_3072 0.61 +0.4
3,878,971 - DvMF_3072 0.72 +0.8
3,879,115 - DvMF_3072 0.80 +0.9
3,879,222 + DvMF_3072 0.86 +0.8
3,879,361 - +0.8
3,879,531 + +0.2
3,879,538 + +0.3
3,879,617 + +0.5
3,879,889 + +1.0
3,879,897 - -0.2
3,879,897 - +0.3
3,879,937 + +0.3
3,880,135 + DvMF_3073 0.16 +1.6
3,880,355 + DvMF_3073 0.27 +1.6
3,880,381 - DvMF_3073 0.28 +0.6
3,880,461 - DvMF_3073 0.32 +0.6
3,880,471 + DvMF_3073 0.33 +0.6
3,880,471 - DvMF_3073 0.33 +0.4

Or see this region's nucleotide sequence