Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2500

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2499 and DvMF_2500 are separated by 289 nucleotidesDvMF_2500 and DvMF_2501 overlap by 4 nucleotides DvMF_2499: DvMF_2499 - cytochrome c class III (RefSeq), at 3,152,356 to 3,152,748 _2499 DvMF_2500: DvMF_2500 - precorrin-3B C17-methyltransferase (RefSeq), at 3,153,038 to 3,153,829 _2500 DvMF_2501: DvMF_2501 - cobalamin (vitamin B12) biosynthesis CbiG protein (RefSeq), at 3,153,826 to 3,155,109 _2501 Position (kb) 3153 3154Strain fitness (log2 ratio) -2 -1 0 1 2at 3152.091 kb on + strandat 3152.230 kb on + strandat 3152.230 kb on + strandat 3152.245 kb on + strandat 3152.858 kb on + strandat 3152.866 kb on - strandat 3153.000 kb on + strandat 3153.067 kb on + strandat 3153.281 kb on + strand, within DvMF_2500at 3153.858 kb on + strandat 3153.858 kb on + strandat 3153.957 kb on - strand, within DvMF_2501at 3154.225 kb on + strand, within DvMF_2501at 3154.381 kb on - strand, within DvMF_2501

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,152,091 + +0.9
3,152,230 + +0.6
3,152,230 + +0.4
3,152,245 + +1.3
3,152,858 + +0.6
3,152,866 - +0.1
3,153,000 + +0.3
3,153,067 + -0.1
3,153,281 + DvMF_2500 0.31 -2.2
3,153,858 + +1.9
3,153,858 + +0.2
3,153,957 - DvMF_2501 0.10 +0.9
3,154,225 + DvMF_2501 0.31 -1.5
3,154,381 - DvMF_2501 0.43 -0.4

Or see this region's nucleotide sequence