Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2312

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2311 and DvMF_2312 overlap by 1 nucleotidesDvMF_2312 and DvMF_2313 are separated by 366 nucleotides DvMF_2311: DvMF_2311 - hypothetical protein (RefSeq), at 2,905,350 to 2,909,594 _2311 DvMF_2312: DvMF_2312 - metallophosphoesterase (RefSeq), at 2,909,594 to 2,911,135 _2312 DvMF_2313: DvMF_2313 - DNA-directed DNA polymerase (RefSeq), at 2,911,502 to 2,912,947 _2313 Position (kb) 2909 2910 2911 2912Strain fitness (log2 ratio) -2 -1 0 1 2at 2908.614 kb on + strand, within DvMF_2311at 2908.684 kb on + strand, within DvMF_2311at 2908.687 kb on - strand, within DvMF_2311at 2908.869 kb on - strand, within DvMF_2311at 2908.892 kb on - strand, within DvMF_2311at 2909.033 kb on - strand, within DvMF_2311at 2909.145 kb on + strand, within DvMF_2311at 2909.245 kb on - strandat 2909.255 kb on - strandat 2909.275 kb on - strandat 2909.372 kb on + strandat 2909.616 kb on + strandat 2909.744 kb on + strandat 2909.909 kb on + strand, within DvMF_2312at 2909.988 kb on + strand, within DvMF_2312at 2910.197 kb on + strand, within DvMF_2312at 2910.413 kb on + strand, within DvMF_2312at 2910.500 kb on + strand, within DvMF_2312at 2910.500 kb on + strand, within DvMF_2312at 2910.508 kb on - strand, within DvMF_2312at 2910.575 kb on + strand, within DvMF_2312at 2910.630 kb on + strand, within DvMF_2312at 2910.638 kb on - strand, within DvMF_2312at 2910.910 kb on + strand, within DvMF_2312at 2910.924 kb on - strand, within DvMF_2312at 2910.945 kb on - strand, within DvMF_2312at 2911.344 kb on + strandat 2911.523 kb on - strandat 2911.680 kb on + strand, within DvMF_2313at 2911.859 kb on - strand, within DvMF_2313at 2911.869 kb on - strand, within DvMF_2313at 2911.996 kb on + strand, within DvMF_2313at 2912.046 kb on + strand, within DvMF_2313at 2912.111 kb on + strand, within DvMF_2313

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,908,614 + DvMF_2311 0.77 +0.2
2,908,684 + DvMF_2311 0.79 -0.0
2,908,687 - DvMF_2311 0.79 +0.7
2,908,869 - DvMF_2311 0.83 +0.2
2,908,892 - DvMF_2311 0.83 +1.9
2,909,033 - DvMF_2311 0.87 -0.7
2,909,145 + DvMF_2311 0.89 -2.0
2,909,245 - -0.1
2,909,255 - -0.0
2,909,275 - +0.1
2,909,372 + -0.0
2,909,616 + +0.7
2,909,744 + +1.5
2,909,909 + DvMF_2312 0.20 -1.3
2,909,988 + DvMF_2312 0.26 -0.4
2,910,197 + DvMF_2312 0.39 -0.1
2,910,413 + DvMF_2312 0.53 -0.1
2,910,500 + DvMF_2312 0.59 +0.1
2,910,500 + DvMF_2312 0.59 -0.4
2,910,508 - DvMF_2312 0.59 -0.0
2,910,575 + DvMF_2312 0.64 -0.5
2,910,630 + DvMF_2312 0.67 +0.1
2,910,638 - DvMF_2312 0.68 +0.2
2,910,910 + DvMF_2312 0.85 -0.0
2,910,924 - DvMF_2312 0.86 -1.2
2,910,945 - DvMF_2312 0.88 -0.1
2,911,344 + -0.1
2,911,523 - +0.6
2,911,680 + DvMF_2313 0.12 +0.1
2,911,859 - DvMF_2313 0.25 +0.5
2,911,869 - DvMF_2313 0.25 +0.2
2,911,996 + DvMF_2313 0.34 +1.1
2,912,046 + DvMF_2313 0.38 +0.2
2,912,111 + DvMF_2313 0.42 +0.4

Or see this region's nucleotide sequence