Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1783

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1782 and DvMF_1783 are separated by 236 nucleotidesDvMF_1783 and DvMF_1784 are separated by 310 nucleotides DvMF_1782: DvMF_1782 - CheD (RefSeq), at 2,182,252 to 2,182,956 _1782 DvMF_1783: DvMF_1783 - histone family protein DNA-binding protein (RefSeq), at 2,183,193 to 2,183,468 _1783 DvMF_1784: DvMF_1784 - membrane-bound metal-dependent hydrolase (RefSeq), at 2,183,779 to 2,184,876 _1784 Position (kb) 2183 2184Strain fitness (log2 ratio) -2 -1 0 1at 2182.238 kb on - strandat 2182.292 kb on - strandat 2182.480 kb on - strand, within DvMF_1782at 2182.605 kb on + strand, within DvMF_1782at 2182.863 kb on + strand, within DvMF_1782at 2182.863 kb on - strand, within DvMF_1782at 2182.920 kb on - strandat 2182.970 kb on + strandat 2182.971 kb on + strandat 2182.985 kb on - strandat 2183.035 kb on - strandat 2183.361 kb on - strand, within DvMF_1783at 2183.397 kb on - strand, within DvMF_1783at 2183.505 kb on + strandat 2183.626 kb on - strandat 2183.902 kb on - strand, within DvMF_1784at 2183.903 kb on + strand, within DvMF_1784at 2184.053 kb on + strand, within DvMF_1784at 2184.093 kb on - strand, within DvMF_1784at 2184.144 kb on + strand, within DvMF_1784at 2184.144 kb on + strand, within DvMF_1784at 2184.152 kb on - strand, within DvMF_1784at 2184.192 kb on + strand, within DvMF_1784at 2184.330 kb on - strand, within DvMF_1784at 2184.359 kb on + strand, within DvMF_1784at 2184.359 kb on + strand, within DvMF_1784at 2184.364 kb on + strand, within DvMF_1784at 2184.367 kb on - strand, within DvMF_1784at 2184.385 kb on + strand, within DvMF_1784at 2184.463 kb on - strand, within DvMF_1784

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,182,238 - +0.1
2,182,292 - +0.4
2,182,480 - DvMF_1782 0.32 -0.1
2,182,605 + DvMF_1782 0.50 +0.9
2,182,863 + DvMF_1782 0.87 +0.7
2,182,863 - DvMF_1782 0.87 +0.7
2,182,920 - +0.3
2,182,970 + +0.6
2,182,971 + +0.7
2,182,985 - +1.4
2,183,035 - +0.2
2,183,361 - DvMF_1783 0.61 -0.4
2,183,397 - DvMF_1783 0.74 +0.1
2,183,505 + -0.0
2,183,626 - -0.0
2,183,902 - DvMF_1784 0.11 +0.8
2,183,903 + DvMF_1784 0.11 +0.0
2,184,053 + DvMF_1784 0.25 -2.3
2,184,093 - DvMF_1784 0.29 +1.2
2,184,144 + DvMF_1784 0.33 +0.4
2,184,144 + DvMF_1784 0.33 +0.4
2,184,152 - DvMF_1784 0.34 -0.0
2,184,192 + DvMF_1784 0.38 +0.5
2,184,330 - DvMF_1784 0.50 +1.1
2,184,359 + DvMF_1784 0.53 +0.4
2,184,359 + DvMF_1784 0.53 +0.1
2,184,364 + DvMF_1784 0.53 +0.5
2,184,367 - DvMF_1784 0.54 +0.8
2,184,385 + DvMF_1784 0.55 -0.2
2,184,463 - DvMF_1784 0.62 -0.1

Or see this region's nucleotide sequence