Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1530

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1528 and DvMF_1529 are separated by 72 nucleotidesDvMF_1529 and DvMF_1530 are separated by 371 nucleotidesDvMF_1530 and DvMF_1531 are separated by 422 nucleotidesDvMF_1531 and DvMF_1532 are separated by 221 nucleotides DvMF_1528: DvMF_1528 - phospholipase D/Transphosphatidylase (RefSeq), at 1,883,223 to 1,884,692 _1528 DvMF_1529: DvMF_1529 - UspA domain protein (RefSeq), at 1,884,765 to 1,885,190 _1529 DvMF_1530: DvMF_1530 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 1,885,562 to 1,888,252 _1530 DvMF_1531: DvMF_1531 - hypothetical protein (RefSeq), at 1,888,675 to 1,888,866 _1531 DvMF_1532: DvMF_1532 - carboxynorspermidine decarboxylase (RefSeq), at 1,889,088 to 1,890,305 _1532 Position (kb) 1885 1886 1887 1888 1889Strain fitness (log2 ratio) -1 0 1at 1884.562 kb on - strandat 1884.634 kb on - strandat 1884.719 kb on - strandat 1884.918 kb on - strand, within DvMF_1529at 1884.951 kb on - strand, within DvMF_1529at 1885.028 kb on - strand, within DvMF_1529at 1885.209 kb on - strandat 1885.211 kb on - strandat 1885.335 kb on + strandat 1885.901 kb on + strand, within DvMF_1530at 1886.160 kb on + strand, within DvMF_1530at 1886.192 kb on - strand, within DvMF_1530at 1886.419 kb on - strand, within DvMF_1530at 1886.444 kb on - strand, within DvMF_1530at 1886.701 kb on + strand, within DvMF_1530at 1886.869 kb on + strand, within DvMF_1530at 1887.022 kb on + strand, within DvMF_1530at 1887.065 kb on - strand, within DvMF_1530at 1887.743 kb on + strand, within DvMF_1530at 1887.953 kb on + strand, within DvMF_1530at 1888.073 kb on - strandat 1888.332 kb on - strandat 1888.446 kb on - strandat 1888.478 kb on + strandat 1888.500 kb on - strandat 1888.500 kb on - strandat 1888.638 kb on - strandat 1888.680 kb on - strandat 1888.754 kb on - strand, within DvMF_1531at 1889.009 kb on + strandat 1889.041 kb on - strandat 1889.079 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,884,562 - +0.2
1,884,634 - -0.1
1,884,719 - +0.3
1,884,918 - DvMF_1529 0.36 +1.1
1,884,951 - DvMF_1529 0.44 +0.7
1,885,028 - DvMF_1529 0.62 -0.0
1,885,209 - +1.1
1,885,211 - +0.6
1,885,335 + +0.8
1,885,901 + DvMF_1530 0.13 -0.3
1,886,160 + DvMF_1530 0.22 +0.4
1,886,192 - DvMF_1530 0.23 +0.1
1,886,419 - DvMF_1530 0.32 +0.2
1,886,444 - DvMF_1530 0.33 +0.5
1,886,701 + DvMF_1530 0.42 -1.2
1,886,869 + DvMF_1530 0.49 +0.4
1,887,022 + DvMF_1530 0.54 +0.4
1,887,065 - DvMF_1530 0.56 +0.5
1,887,743 + DvMF_1530 0.81 -0.2
1,887,953 + DvMF_1530 0.89 +0.2
1,888,073 - +0.6
1,888,332 - -0.3
1,888,446 - -0.4
1,888,478 + +0.5
1,888,500 - +1.1
1,888,500 - +0.4
1,888,638 - +0.9
1,888,680 - +0.1
1,888,754 - DvMF_1531 0.41 +0.2
1,889,009 + +1.3
1,889,041 - +0.3
1,889,079 - +0.7

Or see this region's nucleotide sequence