Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0136

Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt11711882 and 11427128 are separated by 0 nucleotides11427128 and 11569491 overlap by 33 nucleotides11569491 and 11711883 overlap by 33 nucleotides11711883 and 11427129 are separated by 0 nucleotides11427129 and 11569492 overlap by 32 nucleotides11569492 and 11711884 overlap by 32 nucleotides11711884 and 11427130 are separated by 0 nucleotides11427130 and 11569493 overlap by 34 nucleotides11569493 and 11711885 overlap by 34 nucleotides11711885 and 11427131 are separated by 0 nucleotides11427131 and 11569494 overlap by 32 nucleotides11569494 and 11711886 overlap by 32 nucleotides11711886 and 11427132 are separated by 0 nucleotides11427132 and 11569495 overlap by 33 nucleotides11569495 and 11711887 overlap by 33 nucleotides11711887 and 11427133 are separated by 0 nucleotides11427133 and 11569496 overlap by 32 nucleotides11569496 and 11711888 overlap by 32 nucleotides11711888 and 11427134 are separated by 0 nucleotides11427134 and 11569497 overlap by 33 nucleotides11569497 and 11711889 overlap by 33 nucleotides11711889 and 11427135 are separated by 0 nucleotides11427135 and 11569498 overlap by 32 nucleotides11569498 and 11711890 overlap by 32 nucleotides11711890 and 11427136 are separated by 0 nucleotides11427136 and 11569499 overlap by 33 nucleotides11569499 and 11711891 overlap by 33 nucleotides11711891 and 11427137 are separated by 0 nucleotides11427137 and 11569500 overlap by 32 nucleotides11569500 and 11711892 overlap by 32 nucleotides11711892 and 11427138 are separated by 0 nucleotides11427138 and 11569501 overlap by 34 nucleotides11569501 and 11711893 overlap by 34 nucleotides11711893 and 11427139 are separated by 0 nucleotides11427139 and 11569502 overlap by 32 nucleotides11569502 and 11711894 overlap by 32 nucleotides11711894 and 11427140 are separated by 0 nucleotides11427140 and 11569503 overlap by 33 nucleotides11569503 and 11711895 overlap by 33 nucleotides11711895 and 11427141 are separated by 0 nucleotides11427141 and 11569504 overlap by 32 nucleotides11569504 and 11711896 overlap by 32 nucleotides11711896 and 11427142 are separated by 0 nucleotides11427142 and 11569505 overlap by 34 nucleotides11569505 and 11711897 overlap by 34 nucleotides11711897 and 11427143 are separated by 0 nucleotides11427143 and 11569506 overlap by 32 nucleotides11569506 and 11711898 overlap by 32 nucleotides11711898 and 11427144 are separated by 0 nucleotides11427144 and 11569507 overlap by 34 nucleotides11569507 and 11711899 overlap by 34 nucleotides11711899 and 11427145 are separated by 0 nucleotides11427145 and 11569508 overlap by 32 nucleotides11569508 and 11711900 overlap by 32 nucleotides11711900 and 11427146 are separated by 0 nucleotides11427146 and 11569509 overlap by 35 nucleotides11569509 and 11711901 overlap by 35 nucleotides11711901 and 11427147 are separated by 0 nucleotides11427147 and 11569510 overlap by 32 nucleotides11569510 and 11711902 overlap by 32 nucleotides11711902 and 11427148 are separated by 0 nucleotides11427148 and 11569511 overlap by 35 nucleotides11569511 and 11711903 overlap by 35 nucleotides11711903 and 11427149 are separated by 0 nucleotides11427149 and 11569512 overlap by 32 nucleotides11569512 and 11711904 overlap by 32 nucleotides11711904 and 11427150 are separated by 0 nucleotides11427150 and 11569513 overlap by 33 nucleotides11569513 and 11711905 overlap by 33 nucleotides11711905 and 11427151 are separated by 0 nucleotides11427151 and 11569514 overlap by 32 nucleotides11569514 and 11711906 overlap by 32 nucleotides11711906 and 11427152 are separated by 0 nucleotides11427152 and 11569515 overlap by 35 nucleotides11569515 and 11711907 overlap by 35 nucleotides11711907 and 11427153 are separated by 0 nucleotides11427153 and 11569516 overlap by 32 nucleotides11569516 and 11711908 overlap by 32 nucleotides11711908 and zupT are separated by 116 nucleotideszupT and DVUA0137 are separated by 121 nucleotidesDVUA0137 and DVUA0138 overlap by 14 nucleotides 11427127 - no description, at 176,825 to 176,856 11427127 11569490 - no description, at 176,825 to 176,856 11569490 11711882 - no description, at 176,825 to 176,856 11711882 11427128 - no description, at 176,857 to 176,889 11427128 11569491 - no description, at 176,857 to 176,889 11569491 11711883 - no description, at 176,857 to 176,889 11711883 11427129 - no description, at 176,890 to 176,921 11427129 11569492 - no description, at 176,890 to 176,921 11569492 11711884 - no description, at 176,890 to 176,921 11711884 11427130 - no description, at 176,922 to 176,955 11427130 11569493 - no description, at 176,922 to 176,955 11569493 11711885 - no description, at 176,922 to 176,955 11711885 11427131 - no description, at 176,956 to 176,987 11427131 11569494 - no description, at 176,956 to 176,987 11569494 11711886 - no description, at 176,956 to 176,987 11711886 11427132 - no description, at 176,988 to 177,020 11427132 11569495 - no description, at 176,988 to 177,020 11569495 11711887 - no description, at 176,988 to 177,020 11711887 11427133 - no description, at 177,021 to 177,052 11427133 11569496 - no description, at 177,021 to 177,052 11569496 11711888 - no description, at 177,021 to 177,052 11711888 11427134 - no description, at 177,053 to 177,085 11427134 11569497 - no description, at 177,053 to 177,085 11569497 11711889 - no description, at 177,053 to 177,085 11711889 11427135 - no description, at 177,086 to 177,117 11427135 11569498 - no description, at 177,086 to 177,117 11569498 11711890 - no description, at 177,086 to 177,117 11711890 11427136 - no description, at 177,118 to 177,150 11427136 11569499 - no description, at 177,118 to 177,150 11569499 11711891 - no description, at 177,118 to 177,150 11711891 11427137 - no description, at 177,151 to 177,182 11427137 11569500 - no description, at 177,151 to 177,182 11569500 11711892 - no description, at 177,151 to 177,182 11711892 11427138 - no description, at 177,183 to 177,216 11427138 11569501 - no description, at 177,183 to 177,216 11569501 11711893 - no description, at 177,183 to 177,216 11711893 11427139 - no description, at 177,217 to 177,248 11427139 11569502 - no description, at 177,217 to 177,248 11569502 11711894 - no description, at 177,217 to 177,248 11711894 11427140 - no description, at 177,249 to 177,281 11427140 11569503 - no description, at 177,249 to 177,281 11569503 11711895 - no description, at 177,249 to 177,281 11711895 11427141 - no description, at 177,282 to 177,313 11427141 11569504 - no description, at 177,282 to 177,313 11569504 11711896 - no description, at 177,282 to 177,313 11711896 11427142 - no description, at 177,314 to 177,347 11427142 11569505 - no description, at 177,314 to 177,347 11569505 11711897 - no description, at 177,314 to 177,347 11711897 11427143 - no description, at 177,348 to 177,379 11427143 11569506 - no description, at 177,348 to 177,379 11569506 11711898 - no description, at 177,348 to 177,379 11711898 11427144 - no description, at 177,380 to 177,413 11427144 11569507 - no description, at 177,380 to 177,413 11569507 11711899 - no description, at 177,380 to 177,413 11711899 11427145 - no description, at 177,414 to 177,445 11427145 11569508 - no description, at 177,414 to 177,445 11569508 11711900 - no description, at 177,414 to 177,445 11711900 11427146 - no description, at 177,446 to 177,480 11427146 11569509 - no description, at 177,446 to 177,480 11569509 11711901 - no description, at 177,446 to 177,480 11711901 11427147 - no description, at 177,481 to 177,512 11427147 11569510 - no description, at 177,481 to 177,512 11569510 11711902 - no description, at 177,481 to 177,512 11711902 11427148 - no description, at 177,513 to 177,547 11427148 11569511 - no description, at 177,513 to 177,547 11569511 11711903 - no description, at 177,513 to 177,547 11711903 11427149 - no description, at 177,548 to 177,579 11427149 11569512 - no description, at 177,548 to 177,579 11569512 11711904 - no description, at 177,548 to 177,579 11711904 11427150 - no description, at 177,580 to 177,612 11427150 11569513 - no description, at 177,580 to 177,612 11569513 11711905 - no description, at 177,580 to 177,612 11711905 11427151 - no description, at 177,613 to 177,644 11427151 11569514 - no description, at 177,613 to 177,644 11569514 11711906 - no description, at 177,613 to 177,644 11711906 11427152 - no description, at 177,645 to 177,679 11427152 11569515 - no description, at 177,645 to 177,679 11569515 11711907 - no description, at 177,645 to 177,679 11711907 11427153 - no description, at 177,680 to 177,711 11427153 11569516 - no description, at 177,680 to 177,711 11569516 11711908 - no description, at 177,680 to 177,711 11711908 DVUA0136: zupT - zinc transporter (TIGR), at 177,828 to 178,661 zupT DVUA0137: DVUA0137 - response regulator (TIGR), at 178,783 to 179,430 DVUA0137 DVUA0138: DVUA0138 - sensor histidine kinase (TIGR), at 179,417 to 181,501 DVUA0138 Position (kb) 177 178 179Strain fitness (log2 ratio) -1 0 1 2at 176.962 kb on - strandat 176.987 kb on - strandat 176.989 kb on + strandat 177.004 kb on + strandat 177.006 kb on + strandat 177.006 kb on + strandat 177.076 kb on + strandat 177.128 kb on + strandat 177.136 kb on - strandat 177.156 kb on + strandat 177.272 kb on + strandat 177.387 kb on - strandat 177.403 kb on + strandat 177.446 kb on - strandat 177.455 kb on + strandat 177.498 kb on + strandat 177.534 kb on - strandat 177.546 kb on + strandat 177.613 kb on + strandat 177.625 kb on - strandat 177.678 kb on + strandat 177.760 kb on + strandat 177.760 kb on + strandat 177.760 kb on + strandat 177.768 kb on - strandat 177.815 kb on + strandat 177.886 kb on + strandat 177.893 kb on + strandat 177.904 kb on + strandat 177.917 kb on - strand, within zupTat 177.969 kb on + strand, within zupTat 177.983 kb on - strand, within zupTat 178.060 kb on - strand, within zupTat 178.131 kb on - strand, within zupTat 178.178 kb on + strand, within zupTat 178.220 kb on + strand, within zupTat 178.235 kb on - strand, within zupTat 178.267 kb on + strand, within zupTat 178.267 kb on + strand, within zupTat 178.276 kb on - strand, within zupTat 178.428 kb on + strand, within zupTat 178.445 kb on + strand, within zupTat 178.453 kb on - strand, within zupTat 178.509 kb on + strand, within zupTat 178.543 kb on + strand, within zupTat 178.589 kb on + strandat 178.597 kb on - strandat 178.602 kb on + strandat 178.627 kb on - strandat 178.648 kb on - strandat 178.715 kb on + strandat 178.805 kb on + strandat 178.813 kb on - strandat 178.823 kb on - strandat 178.823 kb on - strandat 178.825 kb on - strandat 178.832 kb on - strandat 178.882 kb on - strand, within DVUA0137at 179.093 kb on + strand, within DVUA0137at 179.108 kb on - strand, within DVUA0137at 179.162 kb on + strand, within DVUA0137at 179.162 kb on + strand, within DVUA0137at 179.170 kb on - strand, within DVUA0137at 179.170 kb on - strand, within DVUA0137at 179.208 kb on + strand, within DVUA0137at 179.208 kb on + strand, within DVUA0137at 179.261 kb on - strand, within DVUA0137at 179.273 kb on + strand, within DVUA0137at 179.302 kb on + strand, within DVUA0137at 179.304 kb on - strand, within DVUA0137at 179.376 kb on - strandat 179.383 kb on - strandat 179.479 kb on + strandat 179.504 kb on + strandat 179.535 kb on + strandat 179.539 kb on + strandat 179.548 kb on - strandat 179.644 kb on + strand, within DVUA0138at 179.659 kb on + strand, within DVUA0138

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
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176,962 - -0.9
176,987 - -0.4
176,989 + +0.1
177,004 + -0.8
177,006 + -0.6
177,006 + -0.5
177,076 + -0.3
177,128 + +0.2
177,136 - -0.7
177,156 + +0.3
177,272 + -0.8
177,387 - -0.2
177,403 + +1.6
177,446 - -0.7
177,455 + +0.3
177,498 + -0.4
177,534 - -0.0
177,546 + +1.6
177,613 + -0.4
177,625 - -0.2
177,678 + -0.7
177,760 + +0.6
177,760 + -0.5
177,760 + +0.1
177,768 - -0.3
177,815 + -0.1
177,886 + +0.2
177,893 + -0.7
177,904 + +0.5
177,917 - zupT DVUA0136 0.11 -0.7
177,969 + zupT DVUA0136 0.17 +0.0
177,983 - zupT DVUA0136 0.19 +0.0
178,060 - zupT DVUA0136 0.28 -1.2
178,131 - zupT DVUA0136 0.36 -0.4
178,178 + zupT DVUA0136 0.42 -0.6
178,220 + zupT DVUA0136 0.47 -0.5
178,235 - zupT DVUA0136 0.49 -0.4
178,267 + zupT DVUA0136 0.53 -1.6
178,267 + zupT DVUA0136 0.53 -0.6
178,276 - zupT DVUA0136 0.54 -0.4
178,428 + zupT DVUA0136 0.72 +0.6
178,445 + zupT DVUA0136 0.74 -1.4
178,453 - zupT DVUA0136 0.75 +0.0
178,509 + zupT DVUA0136 0.82 -1.3
178,543 + zupT DVUA0136 0.86 -0.7
178,589 + -0.5
178,597 - -0.7
178,602 + -0.2
178,627 - -0.9
178,648 - -0.6
178,715 + -1.6
178,805 + -0.5
178,813 - +0.1
178,823 - -0.5
178,823 - -1.2
178,825 - -0.8
178,832 - +0.0
178,882 - DVUA0137 0.15 -0.2
179,093 + DVUA0137 0.48 +1.8
179,108 - DVUA0137 0.50 -0.5
179,162 + DVUA0137 0.58 -1.1
179,162 + DVUA0137 0.58 -1.0
179,170 - DVUA0137 0.60 -1.2
179,170 - DVUA0137 0.60 -0.5
179,208 + DVUA0137 0.66 -1.4
179,208 + DVUA0137 0.66 -1.2
179,261 - DVUA0137 0.74 -0.5
179,273 + DVUA0137 0.76 -0.3
179,302 + DVUA0137 0.80 +1.3
179,304 - DVUA0137 0.80 -0.6
179,376 - +1.6
179,383 - -1.0
179,479 + -1.4
179,504 + +1.6
179,535 + -0.3
179,539 + +0.9
179,548 - +2.6
179,644 + DVUA0138 0.11 -0.8
179,659 + DVUA0138 0.12 -0.6

Or see this region's nucleotide sequence