Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0037

Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0036 and DVUA0037 are separated by 203 nucleotidesDVUA0037 and b0983 overlap by 1 nucleotidesb0983 and DVUA0039 are separated by 0 nucleotides DVUA0036: DVUA0036 - TPR domain protein (TIGR), at 41,239 to 43,986 DVUA0036 DVUA0037: DVUA0037 - sugar transferase domain protein (TIGR), at 44,190 to 45,644 DVUA0037 DVUA0038: b0983 - capsular polysaccharide transport protein (TIGR), at 45,644 to 46,450 b0983 DVUA0039: DVUA0039 - chain length determinant family protein (TIGR), at 46,451 to 47,953 DVUA0039 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2 3at 43.418 kb on + strand, within DVUA0036at 43.473 kb on - strand, within DVUA0036at 43.473 kb on - strand, within DVUA0036at 43.477 kb on + strand, within DVUA0036at 43.499 kb on + strand, within DVUA0036at 43.507 kb on - strand, within DVUA0036at 43.526 kb on - strand, within DVUA0036at 43.544 kb on - strand, within DVUA0036at 43.554 kb on - strand, within DVUA0036at 43.567 kb on + strand, within DVUA0036at 43.638 kb on - strand, within DVUA0036at 43.729 kb on + strandat 43.737 kb on - strandat 43.737 kb on - strandat 43.737 kb on - strandat 43.754 kb on + strandat 43.772 kb on - strandat 43.805 kb on + strandat 43.880 kb on - strandat 43.880 kb on - strandat 43.880 kb on - strandat 43.880 kb on - strandat 43.903 kb on + strandat 43.926 kb on - strandat 44.003 kb on - strandat 44.039 kb on - strandat 44.159 kb on - strandat 44.172 kb on - strandat 44.314 kb on - strandat 44.351 kb on + strand, within DVUA0037at 44.428 kb on + strand, within DVUA0037at 44.519 kb on + strand, within DVUA0037at 44.571 kb on + strand, within DVUA0037at 44.571 kb on + strand, within DVUA0037at 44.582 kb on + strand, within DVUA0037at 44.616 kb on - strand, within DVUA0037at 44.650 kb on - strand, within DVUA0037at 44.673 kb on + strand, within DVUA0037at 44.673 kb on + strand, within DVUA0037at 44.676 kb on - strand, within DVUA0037at 44.707 kb on + strand, within DVUA0037at 44.715 kb on - strand, within DVUA0037at 44.849 kb on + strand, within DVUA0037at 44.865 kb on + strand, within DVUA0037at 44.872 kb on + strand, within DVUA0037at 44.882 kb on - strand, within DVUA0037at 44.895 kb on + strand, within DVUA0037at 44.944 kb on + strand, within DVUA0037at 44.946 kb on + strand, within DVUA0037at 44.978 kb on - strand, within DVUA0037at 45.012 kb on + strand, within DVUA0037at 45.133 kb on - strand, within DVUA0037at 45.169 kb on + strand, within DVUA0037at 45.177 kb on - strand, within DVUA0037at 45.221 kb on - strand, within DVUA0037at 45.222 kb on - strand, within DVUA0037at 45.232 kb on - strand, within DVUA0037at 45.238 kb on - strand, within DVUA0037at 45.265 kb on - strand, within DVUA0037at 45.423 kb on + strand, within DVUA0037at 45.704 kb on - strandat 45.804 kb on + strand, within b0983at 45.812 kb on - strand, within b0983at 45.842 kb on + strand, within b0983at 45.842 kb on + strand, within b0983at 45.850 kb on - strand, within b0983at 45.859 kb on + strand, within b0983at 45.860 kb on + strand, within b0983at 45.901 kb on - strand, within b0983at 45.960 kb on + strand, within b0983at 46.093 kb on - strand, within b0983at 46.227 kb on + strand, within b0983at 46.234 kb on - strand, within b0983at 46.243 kb on + strand, within b0983at 46.245 kb on + strand, within b0983at 46.250 kb on + strand, within b0983at 46.267 kb on + strand, within b0983at 46.280 kb on + strand, within b0983at 46.345 kb on + strand, within b0983at 46.574 kb on - strandat 46.577 kb on + strandat 46.587 kb on + strandat 46.632 kb on + strand, within DVUA0039

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
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43,418 + DVUA0036 0.79 +1.6
43,473 - DVUA0036 0.81 -1.0
43,473 - DVUA0036 0.81 -0.4
43,477 + DVUA0036 0.81 -0.1
43,499 + DVUA0036 0.82 +0.0
43,507 - DVUA0036 0.83 +0.3
43,526 - DVUA0036 0.83 -0.6
43,544 - DVUA0036 0.84 -2.2
43,554 - DVUA0036 0.84 +2.8
43,567 + DVUA0036 0.85 -0.7
43,638 - DVUA0036 0.87 +1.6
43,729 + -0.7
43,737 - -1.6
43,737 - +0.6
43,737 - +0.1
43,754 + +0.5
43,772 - +2.6
43,805 + +1.6
43,880 - -1.6
43,880 - -0.6
43,880 - -1.4
43,880 - -0.2
43,903 + -0.4
43,926 - +2.6
44,003 - -0.6
44,039 - +1.6
44,159 - -0.2
44,172 - -0.4
44,314 - -0.5
44,351 + DVUA0037 0.11 -1.0
44,428 + DVUA0037 0.16 -0.8
44,519 + DVUA0037 0.23 -1.2
44,571 + DVUA0037 0.26 +1.4
44,571 + DVUA0037 0.26 +0.6
44,582 + DVUA0037 0.27 -1.0
44,616 - DVUA0037 0.29 -1.4
44,650 - DVUA0037 0.32 -0.7
44,673 + DVUA0037 0.33 +2.6
44,673 + DVUA0037 0.33 +1.9
44,676 - DVUA0037 0.33 -1.0
44,707 + DVUA0037 0.36 -0.9
44,715 - DVUA0037 0.36 +0.1
44,849 + DVUA0037 0.45 -0.5
44,865 + DVUA0037 0.46 -2.1
44,872 + DVUA0037 0.47 -1.2
44,882 - DVUA0037 0.48 -0.7
44,895 + DVUA0037 0.48 -0.3
44,944 + DVUA0037 0.52 -1.1
44,946 + DVUA0037 0.52 +0.6
44,978 - DVUA0037 0.54 +0.3
45,012 + DVUA0037 0.56 -0.9
45,133 - DVUA0037 0.65 -1.9
45,169 + DVUA0037 0.67 -0.8
45,177 - DVUA0037 0.68 +0.6
45,221 - DVUA0037 0.71 -0.6
45,222 - DVUA0037 0.71 -1.0
45,232 - DVUA0037 0.72 -0.6
45,238 - DVUA0037 0.72 -0.3
45,265 - DVUA0037 0.74 +1.6
45,423 + DVUA0037 0.85 -0.3
45,704 - -0.3
45,804 + b0983 DVUA0038 0.20 -0.9
45,812 - b0983 DVUA0038 0.21 -1.0
45,842 + b0983 DVUA0038 0.25 -1.2
45,842 + b0983 DVUA0038 0.25 -0.1
45,850 - b0983 DVUA0038 0.26 +3.0
45,859 + b0983 DVUA0038 0.27 +0.4
45,860 + b0983 DVUA0038 0.27 -0.4
45,901 - b0983 DVUA0038 0.32 -0.3
45,960 + b0983 DVUA0038 0.39 +0.3
46,093 - b0983 DVUA0038 0.56 -0.7
46,227 + b0983 DVUA0038 0.72 -1.1
46,234 - b0983 DVUA0038 0.73 +1.6
46,243 + b0983 DVUA0038 0.74 +0.0
46,245 + b0983 DVUA0038 0.74 -1.1
46,250 + b0983 DVUA0038 0.75 -0.8
46,267 + b0983 DVUA0038 0.77 -0.1
46,280 + b0983 DVUA0038 0.79 -0.2
46,345 + b0983 DVUA0038 0.87 -0.1
46,574 - -0.3
46,577 + +0.4
46,587 + -0.8
46,632 + DVUA0039 0.12 -0.4

Or see this region's nucleotide sequence