Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0093

Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntkatA and DVUA0092 are separated by 218 nucleotidesDVUA0092 and DVUA0093 are separated by 188 nucleotidesDVUA0093 and chrB are separated by 9 nucleotides DVUA0091: katA - catalase (TIGR), at 123,495 to 124,952 katA DVUA0092: DVUA0092 - hypothetical protein (TIGR), at 125,171 to 125,650 DVUA0092 DVUA0093: DVUA0093 - chromate transport family protein (TIGR), at 125,839 to 127,176 DVUA0093 DVUA0094: chrB - chrB protein (TIGR), at 127,186 to 128,190 chrB Position (kb) 125 126 127 128Strain fitness (log2 ratio) -2 -1 0 1 2 3at 124.928 kb on - strandat 124.951 kb on + strandat 124.954 kb on - strandat 125.054 kb on + strandat 125.054 kb on + strandat 125.075 kb on - strandat 125.348 kb on + strand, within DVUA0092at 125.417 kb on - strand, within DVUA0092at 125.424 kb on + strand, within DVUA0092at 125.520 kb on - strand, within DVUA0092at 125.597 kb on - strand, within DVUA0092at 125.629 kb on - strandat 125.694 kb on + strandat 125.717 kb on + strandat 125.725 kb on - strandat 125.762 kb on + strandat 125.787 kb on - strandat 125.791 kb on + strandat 125.809 kb on - strandat 125.861 kb on + strandat 125.965 kb on - strandat 126.010 kb on - strand, within DVUA0093at 126.013 kb on + strand, within DVUA0093at 126.033 kb on + strand, within DVUA0093at 126.033 kb on + strand, within DVUA0093at 126.058 kb on - strand, within DVUA0093at 126.068 kb on - strand, within DVUA0093at 126.068 kb on - strand, within DVUA0093at 126.142 kb on + strand, within DVUA0093at 126.190 kb on - strand, within DVUA0093at 126.287 kb on + strand, within DVUA0093at 126.373 kb on + strand, within DVUA0093at 126.383 kb on + strand, within DVUA0093at 126.388 kb on + strand, within DVUA0093at 126.396 kb on - strand, within DVUA0093at 126.396 kb on - strand, within DVUA0093at 126.398 kb on + strand, within DVUA0093at 126.474 kb on - strand, within DVUA0093at 126.501 kb on + strand, within DVUA0093at 126.530 kb on + strand, within DVUA0093at 126.550 kb on - strand, within DVUA0093at 126.629 kb on + strand, within DVUA0093at 126.673 kb on + strand, within DVUA0093at 126.690 kb on + strand, within DVUA0093at 126.780 kb on + strand, within DVUA0093at 126.785 kb on + strand, within DVUA0093at 126.821 kb on + strand, within DVUA0093at 126.821 kb on + strand, within DVUA0093at 126.912 kb on + strand, within DVUA0093at 127.164 kb on + strandat 127.183 kb on + strandat 127.196 kb on - strandat 127.221 kb on + strandat 127.352 kb on - strand, within chrBat 127.376 kb on + strand, within chrBat 127.400 kb on - strand, within chrBat 127.453 kb on + strand, within chrBat 127.476 kb on + strand, within chrBat 127.580 kb on - strand, within chrBat 127.649 kb on + strand, within chrBat 127.693 kb on + strand, within chrBat 127.743 kb on - strand, within chrBat 127.757 kb on + strand, within chrBat 127.767 kb on + strand, within chrBat 127.898 kb on + strand, within chrBat 127.947 kb on - strand, within chrBat 127.963 kb on + strand, within chrBat 127.980 kb on + strand, within chrBat 128.027 kb on + strand, within chrBat 128.035 kb on - strand, within chrBat 128.172 kb on - strandat 128.174 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
remove
124,928 - -1.4
124,951 + +0.5
124,954 - +0.4
125,054 + +3.5
125,054 + +0.4
125,075 - -0.7
125,348 + DVUA0092 0.37 -0.4
125,417 - DVUA0092 0.51 +0.0
125,424 + DVUA0092 0.53 -0.4
125,520 - DVUA0092 0.73 -1.0
125,597 - DVUA0092 0.89 -0.2
125,629 - -0.7
125,694 + +0.9
125,717 + -0.5
125,725 - -2.0
125,762 + -1.0
125,787 - -0.2
125,791 + -0.0
125,809 - +1.0
125,861 + -0.4
125,965 - +0.0
126,010 - DVUA0093 0.13 +1.6
126,013 + DVUA0093 0.13 -1.2
126,033 + DVUA0093 0.14 -0.7
126,033 + DVUA0093 0.14 -0.8
126,058 - DVUA0093 0.16 -0.7
126,068 - DVUA0093 0.17 -1.2
126,068 - DVUA0093 0.17 -1.5
126,142 + DVUA0093 0.23 -1.0
126,190 - DVUA0093 0.26 -1.0
126,287 + DVUA0093 0.33 -0.4
126,373 + DVUA0093 0.40 +0.3
126,383 + DVUA0093 0.41 -0.4
126,388 + DVUA0093 0.41 +1.6
126,396 - DVUA0093 0.42 -0.2
126,396 - DVUA0093 0.42 +1.6
126,398 + DVUA0093 0.42 +1.6
126,474 - DVUA0093 0.47 -0.8
126,501 + DVUA0093 0.49 -1.2
126,530 + DVUA0093 0.52 -0.4
126,550 - DVUA0093 0.53 -0.9
126,629 + DVUA0093 0.59 +0.0
126,673 + DVUA0093 0.62 -0.5
126,690 + DVUA0093 0.64 -1.1
126,780 + DVUA0093 0.70 -0.2
126,785 + DVUA0093 0.71 -0.7
126,821 + DVUA0093 0.73 +0.7
126,821 + DVUA0093 0.73 -0.3
126,912 + DVUA0093 0.80 -0.3
127,164 + +1.6
127,183 + -0.6
127,196 - +0.6
127,221 + -1.0
127,352 - chrB DVUA0094 0.17 +1.6
127,376 + chrB DVUA0094 0.19 +0.5
127,400 - chrB DVUA0094 0.21 -0.8
127,453 + chrB DVUA0094 0.27 -1.0
127,476 + chrB DVUA0094 0.29 -0.7
127,580 - chrB DVUA0094 0.39 -1.4
127,649 + chrB DVUA0094 0.46 +0.6
127,693 + chrB DVUA0094 0.50 -0.8
127,743 - chrB DVUA0094 0.55 -1.6
127,757 + chrB DVUA0094 0.57 -0.7
127,767 + chrB DVUA0094 0.58 -0.2
127,898 + chrB DVUA0094 0.71 +1.0
127,947 - chrB DVUA0094 0.76 +1.6
127,963 + chrB DVUA0094 0.77 -1.2
127,980 + chrB DVUA0094 0.79 +0.0
128,027 + chrB DVUA0094 0.84 -0.7
128,035 - chrB DVUA0094 0.84 -0.7
128,172 - +0.1
128,174 + +1.6

Or see this region's nucleotide sequence