Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0119.1 and DVUA0120 are separated by 12 nucleotides DVUA0120 and DVUA0121 are separated by 1 nucleotides DVUA0121 and yscR overlap by 4 nucleotides yscR and DVUA0123 are separated by 30 nucleotides
DVUA0119.1: DVUA0119.1 - SEED: Type III secretion spans bacterial envelope protein (YscO), at 158,959 to 159,453
DVUA0119.1
DVUA0120: DVUA0120 - type III secretion protein, putative (TIGR), at 159,466 to 160,158
DVUA0120
DVUA0121: DVUA0121 - type III secretion system protein, YopQ family (TIGR), at 160,160 to 161,614
DVUA0121
DVUA0122: yscR - type III secretion system protein, YscR family (TIGR), at 161,611 to 162,261
yscR
DVUA0123: DVUA0123 - anti-anti-sigma factor (TIGR), at 162,292 to 162,627
DVUA0123
Position (kb) 160
161
162 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 159.162 kb on + strand, within DVUA0119.1 at 159.163 kb on + strand, within DVUA0119.1 at 159.163 kb on + strand, within DVUA0119.1 at 159.170 kb on - strand, within DVUA0119.1 at 159.227 kb on - strand, within DVUA0119.1 at 159.373 kb on - strand, within DVUA0119.1 at 159.414 kb on + strand at 159.422 kb on - strand at 159.440 kb on + strand at 159.521 kb on + strand at 159.589 kb on - strand, within DVUA0120 at 159.626 kb on + strand, within DVUA0120 at 159.752 kb on + strand, within DVUA0120 at 159.767 kb on + strand, within DVUA0120 at 159.920 kb on - strand, within DVUA0120 at 159.943 kb on + strand, within DVUA0120 at 159.967 kb on + strand, within DVUA0120 at 160.040 kb on + strand, within DVUA0120 at 160.165 kb on - strand at 160.192 kb on + strand at 160.192 kb on + strand at 160.200 kb on - strand at 160.330 kb on + strand, within DVUA0121 at 160.330 kb on + strand, within DVUA0121 at 160.372 kb on + strand, within DVUA0121 at 160.402 kb on - strand, within DVUA0121 at 160.406 kb on + strand, within DVUA0121 at 160.438 kb on - strand, within DVUA0121 at 160.445 kb on - strand, within DVUA0121 at 160.447 kb on + strand, within DVUA0121 at 160.496 kb on + strand, within DVUA0121 at 160.588 kb on + strand, within DVUA0121 at 160.596 kb on - strand, within DVUA0121 at 160.596 kb on - strand, within DVUA0121 at 160.596 kb on - strand, within DVUA0121 at 160.623 kb on - strand, within DVUA0121 at 160.690 kb on + strand, within DVUA0121 at 160.840 kb on - strand, within DVUA0121 at 160.900 kb on - strand, within DVUA0121 at 160.926 kb on - strand, within DVUA0121 at 160.957 kb on + strand, within DVUA0121 at 161.053 kb on + strand, within DVUA0121 at 161.073 kb on - strand, within DVUA0121 at 161.099 kb on + strand, within DVUA0121 at 161.163 kb on + strand, within DVUA0121 at 161.297 kb on + strand, within DVUA0121 at 161.454 kb on - strand, within DVUA0121 at 161.485 kb on + strand at 161.485 kb on + strand at 161.511 kb on + strand at 161.525 kb on + strand at 161.533 kb on - strand at 161.603 kb on - strand at 161.625 kb on - strand at 161.643 kb on + strand at 161.655 kb on + strand at 161.660 kb on + strand at 161.678 kb on - strand, within yscR at 161.697 kb on + strand, within yscR at 161.718 kb on - strand, within yscR at 161.783 kb on + strand, within yscR at 161.828 kb on + strand, within yscR at 161.858 kb on + strand, within yscR at 161.877 kb on - strand, within yscR at 161.898 kb on - strand, within yscR at 161.909 kb on - strand, within yscR at 161.959 kb on + strand, within yscR at 161.980 kb on - strand, within yscR at 162.011 kb on - strand, within yscR at 162.093 kb on + strand, within yscR at 162.094 kb on + strand, within yscR at 162.116 kb on + strand, within yscR at 162.174 kb on - strand, within yscR at 162.243 kb on + strand at 162.251 kb on - strand at 162.280 kb on + strand at 162.380 kb on + strand, within DVUA0123 at 162.402 kb on - strand, within DVUA0123 at 162.450 kb on - strand, within DVUA0123 at 162.491 kb on - strand, within DVUA0123 at 162.543 kb on + strand, within DVUA0123
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract remove 159,162 + DVUA0119.1 0.41 +1.4 159,163 + DVUA0119.1 0.41 -0.4 159,163 + DVUA0119.1 0.41 -0.6 159,170 - DVUA0119.1 0.43 -0.4 159,227 - DVUA0119.1 0.54 -0.4 159,373 - DVUA0119.1 0.84 -0.6 159,414 + -0.3 159,422 - -0.3 159,440 + +0.1 159,521 + +0.0 159,589 - DVUA0120 0.18 -1.0 159,626 + DVUA0120 0.23 +0.6 159,752 + DVUA0120 0.41 -0.8 159,767 + DVUA0120 0.43 -0.7 159,920 - DVUA0120 0.66 +0.6 159,943 + DVUA0120 0.69 -0.1 159,967 + DVUA0120 0.72 +1.6 160,040 + DVUA0120 0.83 -0.2 160,165 - -0.5 160,192 + +1.1 160,192 + -0.4 160,200 - +1.6 160,330 + DVUA0121 0.12 +1.0 160,330 + DVUA0121 0.12 -1.2 160,372 + DVUA0121 0.15 +1.0 160,402 - DVUA0121 0.17 -1.0 160,406 + DVUA0121 0.17 -1.1 160,438 - DVUA0121 0.19 +1.6 160,445 - DVUA0121 0.20 -1.1 160,447 + DVUA0121 0.20 +1.2 160,496 + DVUA0121 0.23 -0.4 160,588 + DVUA0121 0.29 +1.6 160,596 - DVUA0121 0.30 -0.7 160,596 - DVUA0121 0.30 -0.9 160,596 - DVUA0121 0.30 -1.1 160,623 - DVUA0121 0.32 +2.6 160,690 + DVUA0121 0.36 -0.7 160,840 - DVUA0121 0.47 +0.0 160,900 - DVUA0121 0.51 +0.1 160,926 - DVUA0121 0.53 +3.0 160,957 + DVUA0121 0.55 +0.6 161,053 + DVUA0121 0.61 +2.2 161,073 - DVUA0121 0.63 -1.0 161,099 + DVUA0121 0.65 -0.8 161,163 + DVUA0121 0.69 -0.4 161,297 + DVUA0121 0.78 -1.6 161,454 - DVUA0121 0.89 +3.6 161,485 + -0.4 161,485 + +1.6 161,511 + +2.9 161,525 + +1.9 161,533 - -0.4 161,603 - +0.6 161,625 - -1.4 161,643 + -0.7 161,655 + -0.6 161,660 + +0.3 161,678 - yscR DVUA0122 0.10 -1.1 161,697 + yscR DVUA0122 0.13 -1.4 161,718 - yscR DVUA0122 0.16 +0.6 161,783 + yscR DVUA0122 0.26 -1.3 161,828 + yscR DVUA0122 0.33 -0.7 161,858 + yscR DVUA0122 0.38 -1.3 161,877 - yscR DVUA0122 0.41 -0.5 161,898 - yscR DVUA0122 0.44 -0.4 161,909 - yscR DVUA0122 0.46 +2.6 161,959 + yscR DVUA0122 0.53 -1.7 161,980 - yscR DVUA0122 0.57 -0.5 162,011 - yscR DVUA0122 0.61 +0.0 162,093 + yscR DVUA0122 0.74 -1.9 162,094 + yscR DVUA0122 0.74 -0.7 162,116 + yscR DVUA0122 0.78 +1.6 162,174 - yscR DVUA0122 0.86 -1.0 162,243 + -0.6 162,251 - -0.3 162,280 + -0.3 162,380 + DVUA0123 0.26 +0.3 162,402 - DVUA0123 0.33 +1.1 162,450 - DVUA0123 0.47 -2.1 162,491 - DVUA0123 0.59 -0.4 162,543 + DVUA0123 0.75 -0.1
Or see this region's nucleotide sequence