Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pomB and pomA are separated by 3 nucleotides pomA and DVU0641 are separated by 0 nucleotides DVU0641 and DVU0642 are separated by 399 nucleotides
DVU0639: pomB - chemotaxis protein PomB (TIGR), at 709,562 to 710,335
pomB
DVU0640: pomA - chemotaxis protein PomA (TIGR), at 710,339 to 711,091
pomA
DVU0641: DVU0641 - conserved hypothetical protein (TIGR), at 711,092 to 712,240
DVU0641
DVU0642: DVU0642 - hydrolase, alpha/beta fold family (TIGR), at 712,640 to 713,452
DVU0642
Position (kb) 711
712
713 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 710.134 kb on + strand, within pomB at 710.191 kb on - strand, within pomB at 710.197 kb on - strand, within pomB at 710.225 kb on - strand, within pomB at 710.372 kb on + strand at 710.380 kb on - strand at 710.409 kb on + strand at 710.411 kb on + strand at 710.444 kb on - strand, within pomA at 710.444 kb on - strand, within pomA at 710.444 kb on - strand, within pomA at 710.602 kb on + strand, within pomA at 710.651 kb on + strand, within pomA at 710.678 kb on - strand, within pomA at 710.682 kb on - strand, within pomA at 710.725 kb on - strand, within pomA at 710.732 kb on - strand, within pomA at 710.766 kb on - strand, within pomA at 710.771 kb on - strand, within pomA at 710.869 kb on + strand, within pomA at 710.872 kb on - strand, within pomA at 710.882 kb on - strand, within pomA at 710.914 kb on + strand, within pomA at 710.919 kb on + strand, within pomA at 710.922 kb on - strand, within pomA at 711.222 kb on - strand, within DVU0641 at 711.347 kb on - strand, within DVU0641 at 711.377 kb on - strand, within DVU0641 at 711.410 kb on - strand, within DVU0641 at 711.432 kb on - strand, within DVU0641 at 711.432 kb on - strand, within DVU0641 at 711.432 kb on - strand, within DVU0641 at 711.452 kb on - strand, within DVU0641 at 711.465 kb on - strand, within DVU0641 at 711.519 kb on - strand, within DVU0641 at 711.607 kb on - strand, within DVU0641 at 711.756 kb on + strand, within DVU0641 at 711.997 kb on + strand, within DVU0641 at 712.005 kb on - strand, within DVU0641 at 712.048 kb on - strand, within DVU0641 at 712.120 kb on + strand, within DVU0641 at 712.120 kb on + strand, within DVU0641 at 712.128 kb on - strand at 712.150 kb on + strand at 712.158 kb on - strand at 712.170 kb on + strand at 712.497 kb on - strand at 712.505 kb on + strand at 712.547 kb on + strand at 712.693 kb on + strand at 712.693 kb on + strand at 712.701 kb on - strand at 712.701 kb on - strand at 712.741 kb on + strand, within DVU0642 at 712.749 kb on - strand, within DVU0642 at 712.760 kb on + strand, within DVU0642 at 712.844 kb on + strand, within DVU0642 at 712.982 kb on + strand, within DVU0642 at 713.052 kb on - strand, within DVU0642 at 713.147 kb on - strand, within DVU0642 at 713.207 kb on + strand, within DVU0642
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract remove 710,134 + pomB DVU0639 0.74 +1.1 710,191 - pomB DVU0639 0.81 -0.2 710,197 - pomB DVU0639 0.82 -0.7 710,225 - pomB DVU0639 0.86 -0.6 710,372 + -0.3 710,380 - -0.5 710,409 + +0.9 710,411 + -0.4 710,444 - pomA DVU0640 0.14 +0.9 710,444 - pomA DVU0640 0.14 +1.9 710,444 - pomA DVU0640 0.14 +0.5 710,602 + pomA DVU0640 0.35 -0.7 710,651 + pomA DVU0640 0.41 +0.9 710,678 - pomA DVU0640 0.45 +0.7 710,682 - pomA DVU0640 0.46 -0.4 710,725 - pomA DVU0640 0.51 +0.7 710,732 - pomA DVU0640 0.52 +0.1 710,766 - pomA DVU0640 0.57 +0.0 710,771 - pomA DVU0640 0.57 +1.9 710,869 + pomA DVU0640 0.70 +1.3 710,872 - pomA DVU0640 0.71 -0.0 710,882 - pomA DVU0640 0.72 +0.1 710,914 + pomA DVU0640 0.76 -0.2 710,919 + pomA DVU0640 0.77 -0.0 710,922 - pomA DVU0640 0.77 +2.9 711,222 - DVU0641 0.11 -0.4 711,347 - DVU0641 0.22 -0.2 711,377 - DVU0641 0.25 -1.8 711,410 - DVU0641 0.28 +0.9 711,432 - DVU0641 0.30 -0.9 711,432 - DVU0641 0.30 -0.6 711,432 - DVU0641 0.30 +0.2 711,452 - DVU0641 0.31 -0.1 711,465 - DVU0641 0.32 +2.3 711,519 - DVU0641 0.37 -0.9 711,607 - DVU0641 0.45 -0.1 711,756 + DVU0641 0.58 +0.1 711,997 + DVU0641 0.79 -0.3 712,005 - DVU0641 0.79 -1.1 712,048 - DVU0641 0.83 -0.2 712,120 + DVU0641 0.89 +3.2 712,120 + DVU0641 0.89 -0.4 712,128 - -0.6 712,150 + -0.6 712,158 - -0.5 712,170 + -0.0 712,497 - -0.9 712,505 + +0.9 712,547 + -0.6 712,693 + +1.9 712,693 + +0.4 712,701 - +0.6 712,701 - -0.3 712,741 + DVU0642 0.12 +0.4 712,749 - DVU0642 0.13 -0.3 712,760 + DVU0642 0.15 -0.6 712,844 + DVU0642 0.25 +1.4 712,982 + DVU0642 0.42 -0.6 713,052 - DVU0642 0.51 +3.5 713,147 - DVU0642 0.62 -1.1 713,207 + DVU0642 0.70 +0.9
Or see this region's nucleotide sequence