Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fdnG-1 and hybA are separated by 11 nucleotides hybA and DVU0589 are separated by 463 nucleotides
DVU0587: fdnG-1 - formate dehydrogenase, alpha subunit, selenocysteine-containing (TIGR), at 653,387 to 656,404
fdnG-1
DVU0588: hybA - formate dehydrogenase, beta subunit, putative (TIGR), at 656,416 to 657,126
hybA
DVU0589: DVU0589 - molybdopterin-guanine dinucleotide biosynthesis protein B, putative (TIGR), at 657,590 to 658,330
DVU0589
Position (kb) 656
657
658 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 655.451 kb on + strand, within fdnG-1 at 655.461 kb on - strand, within fdnG-1 at 655.484 kb on - strand, within fdnG-1 at 655.542 kb on - strand, within fdnG-1 at 655.624 kb on + strand, within fdnG-1 at 655.666 kb on - strand, within fdnG-1 at 655.666 kb on - strand, within fdnG-1 at 655.700 kb on + strand, within fdnG-1 at 655.743 kb on - strand, within fdnG-1 at 655.747 kb on + strand, within fdnG-1 at 655.862 kb on + strand, within fdnG-1 at 655.864 kb on + strand, within fdnG-1 at 655.870 kb on - strand, within fdnG-1 at 655.883 kb on - strand, within fdnG-1 at 655.883 kb on - strand, within fdnG-1 at 655.918 kb on - strand, within fdnG-1 at 656.232 kb on - strand at 656.239 kb on - strand at 656.286 kb on + strand at 656.324 kb on - strand at 656.398 kb on + strand at 656.398 kb on + strand at 656.399 kb on + strand at 656.406 kb on - strand at 656.406 kb on - strand at 656.406 kb on - strand at 656.432 kb on + strand at 656.540 kb on + strand, within hybA at 656.550 kb on + strand, within hybA at 656.562 kb on + strand, within hybA at 656.569 kb on + strand, within hybA at 656.570 kb on - strand, within hybA at 656.570 kb on - strand, within hybA at 656.778 kb on + strand, within hybA at 656.783 kb on + strand, within hybA at 656.848 kb on + strand, within hybA at 656.856 kb on - strand, within hybA at 656.914 kb on + strand, within hybA at 656.964 kb on + strand, within hybA at 656.970 kb on + strand, within hybA at 656.980 kb on + strand, within hybA at 656.980 kb on + strand, within hybA at 656.988 kb on - strand, within hybA at 656.988 kb on - strand, within hybA at 656.991 kb on + strand, within hybA at 656.999 kb on - strand, within hybA at 657.001 kb on - strand, within hybA at 657.128 kb on - strand at 657.128 kb on - strand at 657.128 kb on - strand at 657.289 kb on - strand at 657.319 kb on + strand at 657.327 kb on + strand at 657.327 kb on + strand at 657.327 kb on - strand at 657.335 kb on - strand at 657.335 kb on - strand at 657.370 kb on - strand at 657.427 kb on + strand at 657.473 kb on - strand at 657.480 kb on + strand at 657.485 kb on + strand at 657.493 kb on - strand at 657.587 kb on + strand at 657.600 kb on - strand at 657.702 kb on + strand, within DVU0589 at 657.702 kb on + strand, within DVU0589 at 657.702 kb on + strand, within DVU0589 at 657.702 kb on + strand, within DVU0589 at 657.702 kb on + strand, within DVU0589 at 657.702 kb on + strand, within DVU0589 at 657.710 kb on - strand, within DVU0589 at 657.710 kb on - strand, within DVU0589 at 657.710 kb on - strand, within DVU0589 at 657.710 kb on - strand, within DVU0589 at 657.762 kb on + strand, within DVU0589 at 657.770 kb on - strand, within DVU0589 at 657.770 kb on - strand, within DVU0589 at 657.770 kb on - strand, within DVU0589 at 657.780 kb on - strand, within DVU0589 at 657.873 kb on - strand, within DVU0589 at 657.895 kb on + strand, within DVU0589 at 658.049 kb on - strand, within DVU0589 at 658.078 kb on + strand, within DVU0589 at 658.086 kb on - strand, within DVU0589 at 658.111 kb on + strand, within DVU0589
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract remove 655,451 + fdnG-1 DVU0587 0.68 +0.3 655,461 - fdnG-1 DVU0587 0.69 -0.7 655,484 - fdnG-1 DVU0587 0.69 +1.9 655,542 - fdnG-1 DVU0587 0.71 -0.4 655,624 + fdnG-1 DVU0587 0.74 -0.2 655,666 - fdnG-1 DVU0587 0.76 -0.4 655,666 - fdnG-1 DVU0587 0.76 -0.1 655,700 + fdnG-1 DVU0587 0.77 -0.6 655,743 - fdnG-1 DVU0587 0.78 +3.3 655,747 + fdnG-1 DVU0587 0.78 +1.9 655,862 + fdnG-1 DVU0587 0.82 -0.1 655,864 + fdnG-1 DVU0587 0.82 +1.9 655,870 - fdnG-1 DVU0587 0.82 -0.6 655,883 - fdnG-1 DVU0587 0.83 +0.9 655,883 - fdnG-1 DVU0587 0.83 -0.3 655,918 - fdnG-1 DVU0587 0.84 +3.0 656,232 - +0.9 656,239 - -1.6 656,286 + -0.2 656,324 - +0.1 656,398 + -0.7 656,398 + +0.2 656,399 + +0.3 656,406 - -0.3 656,406 - +1.3 656,406 - -0.4 656,432 + +1.3 656,540 + hybA DVU0588 0.17 -0.1 656,550 + hybA DVU0588 0.19 -0.7 656,562 + hybA DVU0588 0.21 +1.9 656,569 + hybA DVU0588 0.22 +3.9 656,570 - hybA DVU0588 0.22 +0.2 656,570 - hybA DVU0588 0.22 -0.2 656,778 + hybA DVU0588 0.51 +3.5 656,783 + hybA DVU0588 0.52 -0.5 656,848 + hybA DVU0588 0.61 -0.7 656,856 - hybA DVU0588 0.62 +0.4 656,914 + hybA DVU0588 0.70 -0.7 656,964 + hybA DVU0588 0.77 -0.7 656,970 + hybA DVU0588 0.78 +0.9 656,980 + hybA DVU0588 0.79 +1.9 656,980 + hybA DVU0588 0.79 -0.7 656,988 - hybA DVU0588 0.80 +0.1 656,988 - hybA DVU0588 0.80 -0.6 656,991 + hybA DVU0588 0.81 -0.1 656,999 - hybA DVU0588 0.82 +0.2 657,001 - hybA DVU0588 0.82 -0.6 657,128 - +0.3 657,128 - -0.1 657,128 - +1.0 657,289 - -0.1 657,319 + -0.1 657,327 + +0.2 657,327 + -0.7 657,327 - -1.7 657,335 - -0.9 657,335 - +0.4 657,370 - +1.9 657,427 + +1.1 657,473 - -0.5 657,480 + -0.4 657,485 + -0.6 657,493 - -1.1 657,587 + -1.9 657,600 - -0.1 657,702 + DVU0589 0.15 +0.2 657,702 + DVU0589 0.15 +0.3 657,702 + DVU0589 0.15 -0.9 657,702 + DVU0589 0.15 -0.1 657,702 + DVU0589 0.15 +0.1 657,702 + DVU0589 0.15 -0.2 657,710 - DVU0589 0.16 +1.1 657,710 - DVU0589 0.16 -0.8 657,710 - DVU0589 0.16 +1.9 657,710 - DVU0589 0.16 +1.9 657,762 + DVU0589 0.23 -0.8 657,770 - DVU0589 0.24 -0.0 657,770 - DVU0589 0.24 -0.1 657,770 - DVU0589 0.24 +0.1 657,780 - DVU0589 0.26 +0.1 657,873 - DVU0589 0.38 +0.5 657,895 + DVU0589 0.41 +0.9 658,049 - DVU0589 0.62 +0.1 658,078 + DVU0589 0.66 +1.9 658,086 - DVU0589 0.67 +0.6 658,111 + DVU0589 0.70 +0.3
Or see this region's nucleotide sequence