Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0585 and DVU0586 are separated by 375 nucleotides DVU0586 and fdnG-1 are separated by 17 nucleotides fdnG-1 and hybA are separated by 11 nucleotides
DVU0585: DVU0585 - conserved hypothetical protein (TIGR), at 650,376 to 652,769
DVU0585
DVU0586: DVU0586 - hypothetical protein (TIGR), at 653,145 to 653,369
DVU0586
DVU0587: fdnG-1 - formate dehydrogenase, alpha subunit, selenocysteine-containing (TIGR), at 653,387 to 656,404
fdnG-1
DVU0588: hybA - formate dehydrogenase, beta subunit, putative (TIGR), at 656,416 to 657,126
hybA
Position (kb) 653
654
655
656
657 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 652.399 kb on - strand, within DVU0585 at 652.414 kb on + strand, within DVU0585 at 652.454 kb on - strand, within DVU0585 at 652.454 kb on - strand, within DVU0585 at 652.454 kb on - strand, within DVU0585 at 652.534 kb on - strand at 652.536 kb on + strand at 652.595 kb on - strand at 652.665 kb on + strand at 652.681 kb on - strand at 652.760 kb on - strand at 652.849 kb on - strand at 652.864 kb on + strand at 652.877 kb on - strand at 652.900 kb on + strand at 652.921 kb on - strand at 652.921 kb on - strand at 652.950 kb on + strand at 652.950 kb on + strand at 652.950 kb on + strand at 653.027 kb on + strand at 653.083 kb on - strand at 653.088 kb on - strand at 653.156 kb on + strand at 653.164 kb on - strand at 653.226 kb on - strand, within DVU0586 at 653.302 kb on - strand, within DVU0586 at 653.331 kb on - strand, within DVU0586 at 653.331 kb on - strand, within DVU0586 at 653.389 kb on - strand at 653.544 kb on + strand at 653.559 kb on - strand at 653.585 kb on + strand at 653.589 kb on - strand at 653.697 kb on + strand, within fdnG-1 at 653.790 kb on - strand, within fdnG-1 at 653.793 kb on + strand, within fdnG-1 at 653.888 kb on + strand, within fdnG-1 at 653.893 kb on + strand, within fdnG-1 at 653.920 kb on - strand, within fdnG-1 at 653.928 kb on + strand, within fdnG-1 at 653.930 kb on - strand, within fdnG-1 at 653.932 kb on + strand, within fdnG-1 at 653.957 kb on + strand, within fdnG-1 at 653.975 kb on - strand, within fdnG-1 at 654.152 kb on + strand, within fdnG-1 at 654.173 kb on - strand, within fdnG-1 at 654.173 kb on - strand, within fdnG-1 at 654.240 kb on - strand, within fdnG-1 at 654.259 kb on + strand, within fdnG-1 at 654.286 kb on + strand, within fdnG-1 at 654.420 kb on - strand, within fdnG-1 at 654.420 kb on - strand, within fdnG-1 at 654.423 kb on + strand, within fdnG-1 at 654.458 kb on - strand, within fdnG-1 at 654.470 kb on + strand, within fdnG-1 at 654.481 kb on + strand, within fdnG-1 at 654.547 kb on + strand, within fdnG-1 at 654.555 kb on - strand, within fdnG-1 at 654.593 kb on - strand, within fdnG-1 at 654.604 kb on - strand, within fdnG-1 at 654.608 kb on + strand, within fdnG-1 at 654.673 kb on + strand, within fdnG-1 at 654.730 kb on - strand, within fdnG-1 at 654.732 kb on + strand, within fdnG-1 at 654.740 kb on - strand, within fdnG-1 at 654.757 kb on + strand, within fdnG-1 at 654.757 kb on + strand, within fdnG-1 at 654.765 kb on - strand, within fdnG-1 at 654.814 kb on - strand, within fdnG-1 at 654.832 kb on + strand, within fdnG-1 at 654.870 kb on + strand, within fdnG-1 at 654.892 kb on + strand, within fdnG-1 at 654.944 kb on - strand, within fdnG-1 at 654.974 kb on + strand, within fdnG-1 at 655.006 kb on + strand, within fdnG-1 at 655.006 kb on + strand, within fdnG-1 at 655.089 kb on - strand, within fdnG-1 at 655.165 kb on + strand, within fdnG-1 at 655.171 kb on - strand, within fdnG-1 at 655.171 kb on - strand, within fdnG-1 at 655.280 kb on + strand, within fdnG-1 at 655.293 kb on - strand, within fdnG-1 at 655.297 kb on + strand, within fdnG-1 at 655.338 kb on - strand, within fdnG-1 at 655.340 kb on - strand, within fdnG-1 at 655.348 kb on + strand, within fdnG-1 at 655.407 kb on + strand, within fdnG-1 at 655.410 kb on + strand, within fdnG-1 at 655.451 kb on + strand, within fdnG-1 at 655.461 kb on - strand, within fdnG-1 at 655.484 kb on - strand, within fdnG-1 at 655.542 kb on - strand, within fdnG-1 at 655.624 kb on + strand, within fdnG-1 at 655.666 kb on - strand, within fdnG-1 at 655.666 kb on - strand, within fdnG-1 at 655.700 kb on + strand, within fdnG-1 at 655.743 kb on - strand, within fdnG-1 at 655.747 kb on + strand, within fdnG-1 at 655.862 kb on + strand, within fdnG-1 at 655.864 kb on + strand, within fdnG-1 at 655.870 kb on - strand, within fdnG-1 at 655.883 kb on - strand, within fdnG-1 at 655.883 kb on - strand, within fdnG-1 at 655.918 kb on - strand, within fdnG-1 at 656.232 kb on - strand at 656.239 kb on - strand at 656.286 kb on + strand at 656.324 kb on - strand at 656.398 kb on + strand at 656.398 kb on + strand at 656.399 kb on + strand at 656.406 kb on - strand at 656.406 kb on - strand at 656.406 kb on - strand at 656.432 kb on + strand at 656.540 kb on + strand, within hybA at 656.550 kb on + strand, within hybA at 656.562 kb on + strand, within hybA at 656.569 kb on + strand, within hybA at 656.570 kb on - strand, within hybA at 656.570 kb on - strand, within hybA at 656.778 kb on + strand, within hybA at 656.783 kb on + strand, within hybA at 656.848 kb on + strand, within hybA at 656.856 kb on - strand, within hybA at 656.914 kb on + strand, within hybA at 656.964 kb on + strand, within hybA at 656.970 kb on + strand, within hybA at 656.980 kb on + strand, within hybA at 656.980 kb on + strand, within hybA at 656.988 kb on - strand, within hybA at 656.988 kb on - strand, within hybA at 656.991 kb on + strand, within hybA at 656.999 kb on - strand, within hybA at 657.001 kb on - strand, within hybA at 657.128 kb on - strand at 657.128 kb on - strand at 657.128 kb on - strand at 657.289 kb on - strand at 657.319 kb on + strand at 657.327 kb on + strand at 657.327 kb on + strand at 657.327 kb on - strand at 657.335 kb on - strand at 657.335 kb on - strand at 657.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract remove 652,399 - DVU0585 0.85 -0.7 652,414 + DVU0585 0.85 -1.1 652,454 - DVU0585 0.87 +0.3 652,454 - DVU0585 0.87 +1.9 652,454 - DVU0585 0.87 -0.1 652,534 - -0.4 652,536 + -0.6 652,595 - +0.5 652,665 + -1.2 652,681 - +0.0 652,760 - -0.4 652,849 - +2.9 652,864 + -1.1 652,877 - +0.0 652,900 + +0.1 652,921 - +1.9 652,921 - -0.8 652,950 + +1.9 652,950 + +1.9 652,950 + +1.9 653,027 + -0.5 653,083 - -0.6 653,088 - -0.5 653,156 + -1.1 653,164 - +0.9 653,226 - DVU0586 0.36 +0.9 653,302 - DVU0586 0.70 -1.0 653,331 - DVU0586 0.83 +1.5 653,331 - DVU0586 0.83 -0.1 653,389 - -0.3 653,544 + -1.9 653,559 - -0.9 653,585 + -1.7 653,589 - -0.4 653,697 + fdnG-1 DVU0587 0.10 +2.9 653,790 - fdnG-1 DVU0587 0.13 -0.1 653,793 + fdnG-1 DVU0587 0.13 -1.1 653,888 + fdnG-1 DVU0587 0.17 -0.3 653,893 + fdnG-1 DVU0587 0.17 -0.1 653,920 - fdnG-1 DVU0587 0.18 -0.8 653,928 + fdnG-1 DVU0587 0.18 +0.6 653,930 - fdnG-1 DVU0587 0.18 -0.1 653,932 + fdnG-1 DVU0587 0.18 -0.0 653,957 + fdnG-1 DVU0587 0.19 -0.8 653,975 - fdnG-1 DVU0587 0.19 -0.4 654,152 + fdnG-1 DVU0587 0.25 -0.2 654,173 - fdnG-1 DVU0587 0.26 -0.2 654,173 - fdnG-1 DVU0587 0.26 +1.9 654,240 - fdnG-1 DVU0587 0.28 +0.4 654,259 + fdnG-1 DVU0587 0.29 -0.4 654,286 + fdnG-1 DVU0587 0.30 +0.2 654,420 - fdnG-1 DVU0587 0.34 -0.5 654,420 - fdnG-1 DVU0587 0.34 -2.1 654,423 + fdnG-1 DVU0587 0.34 -0.5 654,458 - fdnG-1 DVU0587 0.35 +2.9 654,470 + fdnG-1 DVU0587 0.36 +0.3 654,481 + fdnG-1 DVU0587 0.36 -0.7 654,547 + fdnG-1 DVU0587 0.38 -0.3 654,555 - fdnG-1 DVU0587 0.39 -0.1 654,593 - fdnG-1 DVU0587 0.40 -0.2 654,604 - fdnG-1 DVU0587 0.40 -0.5 654,608 + fdnG-1 DVU0587 0.40 +0.4 654,673 + fdnG-1 DVU0587 0.43 +1.9 654,730 - fdnG-1 DVU0587 0.44 +0.2 654,732 + fdnG-1 DVU0587 0.45 +0.2 654,740 - fdnG-1 DVU0587 0.45 -0.5 654,757 + fdnG-1 DVU0587 0.45 -0.1 654,757 + fdnG-1 DVU0587 0.45 -0.1 654,765 - fdnG-1 DVU0587 0.46 -1.2 654,814 - fdnG-1 DVU0587 0.47 -0.5 654,832 + fdnG-1 DVU0587 0.48 -0.5 654,870 + fdnG-1 DVU0587 0.49 +0.6 654,892 + fdnG-1 DVU0587 0.50 +0.9 654,944 - fdnG-1 DVU0587 0.52 +0.2 654,974 + fdnG-1 DVU0587 0.53 -0.6 655,006 + fdnG-1 DVU0587 0.54 +0.6 655,006 + fdnG-1 DVU0587 0.54 +0.8 655,089 - fdnG-1 DVU0587 0.56 +0.3 655,165 + fdnG-1 DVU0587 0.59 -0.2 655,171 - fdnG-1 DVU0587 0.59 -0.7 655,171 - fdnG-1 DVU0587 0.59 -0.8 655,280 + fdnG-1 DVU0587 0.63 +1.3 655,293 - fdnG-1 DVU0587 0.63 +0.3 655,297 + fdnG-1 DVU0587 0.63 -0.1 655,338 - fdnG-1 DVU0587 0.65 -0.1 655,340 - fdnG-1 DVU0587 0.65 -0.3 655,348 + fdnG-1 DVU0587 0.65 -0.2 655,407 + fdnG-1 DVU0587 0.67 -0.7 655,410 + fdnG-1 DVU0587 0.67 -1.7 655,451 + fdnG-1 DVU0587 0.68 +0.3 655,461 - fdnG-1 DVU0587 0.69 -0.7 655,484 - fdnG-1 DVU0587 0.69 +1.9 655,542 - fdnG-1 DVU0587 0.71 -0.4 655,624 + fdnG-1 DVU0587 0.74 -0.2 655,666 - fdnG-1 DVU0587 0.76 -0.4 655,666 - fdnG-1 DVU0587 0.76 -0.1 655,700 + fdnG-1 DVU0587 0.77 -0.6 655,743 - fdnG-1 DVU0587 0.78 +3.3 655,747 + fdnG-1 DVU0587 0.78 +1.9 655,862 + fdnG-1 DVU0587 0.82 -0.1 655,864 + fdnG-1 DVU0587 0.82 +1.9 655,870 - fdnG-1 DVU0587 0.82 -0.6 655,883 - fdnG-1 DVU0587 0.83 +0.9 655,883 - fdnG-1 DVU0587 0.83 -0.3 655,918 - fdnG-1 DVU0587 0.84 +3.0 656,232 - +0.9 656,239 - -1.6 656,286 + -0.2 656,324 - +0.1 656,398 + -0.7 656,398 + +0.2 656,399 + +0.3 656,406 - -0.3 656,406 - +1.3 656,406 - -0.4 656,432 + +1.3 656,540 + hybA DVU0588 0.17 -0.1 656,550 + hybA DVU0588 0.19 -0.7 656,562 + hybA DVU0588 0.21 +1.9 656,569 + hybA DVU0588 0.22 +3.9 656,570 - hybA DVU0588 0.22 +0.2 656,570 - hybA DVU0588 0.22 -0.2 656,778 + hybA DVU0588 0.51 +3.5 656,783 + hybA DVU0588 0.52 -0.5 656,848 + hybA DVU0588 0.61 -0.7 656,856 - hybA DVU0588 0.62 +0.4 656,914 + hybA DVU0588 0.70 -0.7 656,964 + hybA DVU0588 0.77 -0.7 656,970 + hybA DVU0588 0.78 +0.9 656,980 + hybA DVU0588 0.79 +1.9 656,980 + hybA DVU0588 0.79 -0.7 656,988 - hybA DVU0588 0.80 +0.1 656,988 - hybA DVU0588 0.80 -0.6 656,991 + hybA DVU0588 0.81 -0.1 656,999 - hybA DVU0588 0.82 +0.2 657,001 - hybA DVU0588 0.82 -0.6 657,128 - +0.3 657,128 - -0.1 657,128 - +1.0 657,289 - -0.1 657,319 + -0.1 657,327 + +0.2 657,327 + -0.7 657,327 - -1.7 657,335 - -0.9 657,335 - +0.4 657,370 - +1.9
Or see this region's nucleotide sequence