Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0446 and DVU0447 overlap by 8 nucleotides DVU0447 and gmd are separated by 393 nucleotides gmd and DVU0449 overlap by 13 nucleotides
DVU0446: DVU0446 - sodium/solute symporter family protein (TIGR), at 506,042 to 507,589
DVU0446
DVU0447: DVU0447 - membrane protein, putative (TIGR), at 507,582 to 507,899
DVU0447
DVU0448: gmd - GDP-mannose 4,6-dehydratase (TIGR), at 508,293 to 509,438
gmd
DVU0449: DVU0449 - sensor/response regulator (TIGR), at 509,426 to 513,967
DVU0449
Position (kb) 508
509
510 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 507.330 kb on + strand, within DVU0446 at 507.415 kb on + strand, within DVU0446 at 507.446 kb on + strand at 507.451 kb on - strand at 507.477 kb on + strand at 507.535 kb on - strand at 507.560 kb on - strand at 507.560 kb on - strand at 507.562 kb on + strand at 507.562 kb on + strand at 507.570 kb on - strand at 507.570 kb on - strand at 507.570 kb on - strand at 507.607 kb on - strand at 507.685 kb on + strand, within DVU0447 at 507.719 kb on + strand, within DVU0447 at 507.782 kb on + strand, within DVU0447 at 507.800 kb on + strand, within DVU0447 at 507.811 kb on + strand, within DVU0447 at 507.819 kb on - strand, within DVU0447 at 507.863 kb on - strand, within DVU0447 at 507.898 kb on - strand at 507.907 kb on + strand at 507.915 kb on - strand at 507.917 kb on - strand at 507.998 kb on - strand at 507.998 kb on - strand at 508.016 kb on + strand at 508.024 kb on - strand at 508.024 kb on - strand at 508.048 kb on - strand at 508.053 kb on - strand at 508.080 kb on + strand at 508.088 kb on - strand at 508.374 kb on - strand at 508.536 kb on + strand, within gmd at 508.544 kb on - strand, within gmd at 508.651 kb on + strand, within gmd at 508.826 kb on - strand, within gmd at 508.866 kb on + strand, within gmd at 508.957 kb on - strand, within gmd at 508.959 kb on + strand, within gmd at 509.062 kb on - strand, within gmd at 509.474 kb on + strand at 509.503 kb on - strand at 509.508 kb on - strand at 509.615 kb on - strand at 509.619 kb on + strand at 509.705 kb on + strand at 509.793 kb on - strand at 509.836 kb on + strand at 509.844 kb on - strand at 509.844 kb on - strand at 509.865 kb on + strand at 509.873 kb on - strand at 509.882 kb on - strand, within DVU0449 at 509.961 kb on - strand, within DVU0449 at 510.114 kb on + strand, within DVU0449 at 510.114 kb on + strand, within DVU0449 at 510.114 kb on + strand, within DVU0449 at 510.127 kb on - strand, within DVU0449 at 510.127 kb on - strand, within DVU0449 at 510.127 kb on - strand, within DVU0449 at 510.127 kb on - strand, within DVU0449 at 510.143 kb on + strand, within DVU0449 at 510.176 kb on + strand, within DVU0449 at 510.184 kb on - strand, within DVU0449 at 510.218 kb on - strand, within DVU0449 at 510.220 kb on - strand, within DVU0449 at 510.240 kb on + strand, within DVU0449 at 510.265 kb on - strand, within DVU0449 at 510.344 kb on - strand, within DVU0449 at 510.349 kb on + strand, within DVU0449 at 510.359 kb on + strand, within DVU0449 at 510.370 kb on - strand, within DVU0449 at 510.417 kb on + strand, within DVU0449
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract remove 507,330 + DVU0446 0.83 -0.2 507,415 + DVU0446 0.89 -1.1 507,446 + -0.9 507,451 - +0.2 507,477 + +0.7 507,535 - -0.8 507,560 - +1.8 507,560 - -0.3 507,562 + +0.4 507,562 + -0.6 507,570 - +0.0 507,570 - -0.4 507,570 - +1.8 507,607 - -0.6 507,685 + DVU0447 0.32 -0.5 507,719 + DVU0447 0.43 -0.2 507,782 + DVU0447 0.63 -1.0 507,800 + DVU0447 0.69 +0.5 507,811 + DVU0447 0.72 +0.8 507,819 - DVU0447 0.75 +0.2 507,863 - DVU0447 0.88 +0.2 507,898 - -0.4 507,907 + -1.2 507,915 - +0.8 507,917 - -0.3 507,998 - -0.4 507,998 - -0.2 508,016 + +1.8 508,024 - -0.8 508,024 - -0.7 508,048 - -1.0 508,053 - -1.0 508,080 + -0.6 508,088 - -1.8 508,374 - +1.8 508,536 + gmd DVU0448 0.21 +1.8 508,544 - gmd DVU0448 0.22 +0.8 508,651 + gmd DVU0448 0.31 +2.1 508,826 - gmd DVU0448 0.47 +0.8 508,866 + gmd DVU0448 0.50 +1.8 508,957 - gmd DVU0448 0.58 +0.8 508,959 + gmd DVU0448 0.58 +2.8 509,062 - gmd DVU0448 0.67 +0.8 509,474 + +1.1 509,503 - -0.7 509,508 - -0.8 509,615 - -0.3 509,619 + -1.3 509,705 + +2.8 509,793 - -0.2 509,836 + -0.3 509,844 - -1.1 509,844 - -0.2 509,865 + -0.7 509,873 - +1.8 509,882 - DVU0449 0.10 -0.3 509,961 - DVU0449 0.12 -1.2 510,114 + DVU0449 0.15 +1.8 510,114 + DVU0449 0.15 -0.1 510,114 + DVU0449 0.15 +0.8 510,127 - DVU0449 0.15 -0.5 510,127 - DVU0449 0.15 +0.1 510,127 - DVU0449 0.15 +0.0 510,127 - DVU0449 0.15 +0.2 510,143 + DVU0449 0.16 +0.0 510,176 + DVU0449 0.17 -1.3 510,184 - DVU0449 0.17 +1.8 510,218 - DVU0449 0.17 -0.4 510,220 - DVU0449 0.17 +2.0 510,240 + DVU0449 0.18 -1.1 510,265 - DVU0449 0.18 +2.4 510,344 - DVU0449 0.20 -0.5 510,349 + DVU0449 0.20 +3.1 510,359 + DVU0449 0.21 -1.0 510,370 - DVU0449 0.21 -0.6 510,417 + DVU0449 0.22 -1.0
Or see this region's nucleotide sequence