Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0390

Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0388 and DVU0389 overlap by 1 nucleotidesDVU0389 and glcD are separated by 25 nucleotidesglcD and DVU0391 are separated by 60 nucleotides DVU0388: DVU0388 - amino acid ABC transporter, ATP-binding protein (TIGR), at 436,205 to 436,972 DVU0388 DVU0389: DVU0389 - amino acid ABC tranporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 436,972 to 437,646 DVU0389 DVU0390: glcD - glycolate oxidase, subunit GlcD, putative (TIGR), at 437,672 to 439,054 glcD DVU0391: DVU0391 - hypothetical protein (TIGR), at 439,115 to 440,056 DVU0391 Position (kb) 437 438 439 440Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 436.681 kb on + strand, within DVU0388at 436.690 kb on + strand, within DVU0388at 436.724 kb on + strand, within DVU0388at 436.731 kb on + strand, within DVU0388at 436.852 kb on - strand, within DVU0388at 436.879 kb on + strand, within DVU0388at 436.976 kb on - strandat 437.016 kb on + strandat 437.018 kb on + strandat 437.071 kb on - strand, within DVU0389at 437.116 kb on + strand, within DVU0389at 437.124 kb on - strand, within DVU0389at 437.154 kb on + strand, within DVU0389at 437.162 kb on - strand, within DVU0389at 437.181 kb on + strand, within DVU0389at 437.181 kb on + strand, within DVU0389at 437.181 kb on + strand, within DVU0389at 437.205 kb on + strand, within DVU0389at 437.245 kb on + strand, within DVU0389at 437.260 kb on - strand, within DVU0389at 437.270 kb on - strand, within DVU0389at 437.270 kb on - strand, within DVU0389at 437.270 kb on - strand, within DVU0389at 437.299 kb on + strand, within DVU0389at 437.317 kb on - strand, within DVU0389at 437.320 kb on + strand, within DVU0389at 437.325 kb on + strand, within DVU0389at 437.325 kb on + strand, within DVU0389at 437.333 kb on - strand, within DVU0389at 437.358 kb on + strand, within DVU0389at 437.358 kb on + strand, within DVU0389at 437.358 kb on + strand, within DVU0389at 437.366 kb on - strand, within DVU0389at 437.366 kb on - strand, within DVU0389at 437.366 kb on - strand, within DVU0389at 437.366 kb on - strand, within DVU0389at 437.499 kb on + strand, within DVU0389at 437.564 kb on - strand, within DVU0389at 437.597 kb on + strandat 437.649 kb on - strandat 437.660 kb on + strandat 437.668 kb on + strandat 437.676 kb on - strandat 437.676 kb on - strandat 437.789 kb on - strandat 437.916 kb on - strand, within glcDat 437.919 kb on + strand, within glcDat 437.937 kb on + strand, within glcDat 438.022 kb on + strand, within glcDat 438.083 kb on + strand, within glcDat 438.083 kb on + strand, within glcDat 438.091 kb on - strand, within glcDat 438.244 kb on + strand, within glcDat 438.253 kb on - strand, within glcDat 438.270 kb on - strand, within glcDat 438.288 kb on - strand, within glcDat 438.295 kb on - strand, within glcDat 438.317 kb on - strand, within glcDat 438.336 kb on - strand, within glcDat 438.343 kb on + strand, within glcDat 438.350 kb on + strand, within glcDat 438.350 kb on + strand, within glcDat 438.351 kb on - strand, within glcDat 438.357 kb on - strand, within glcDat 438.358 kb on - strand, within glcDat 438.395 kb on + strand, within glcDat 438.440 kb on + strand, within glcDat 438.450 kb on + strand, within glcDat 438.598 kb on + strand, within glcDat 438.598 kb on + strand, within glcDat 438.634 kb on + strand, within glcDat 438.642 kb on - strand, within glcDat 438.660 kb on + strand, within glcDat 438.691 kb on - strand, within glcDat 438.691 kb on - strand, within glcDat 438.837 kb on + strand, within glcDat 438.869 kb on + strand, within glcDat 438.912 kb on + strand, within glcDat 438.935 kb on - strandat 438.984 kb on - strandat 438.996 kb on - strandat 439.043 kb on + strandat 439.043 kb on + strandat 439.050 kb on - strandat 439.070 kb on - strandat 439.070 kb on - strandat 439.070 kb on - strandat 439.074 kb on + strandat 439.074 kb on + strandat 439.217 kb on - strand, within DVU0391at 439.285 kb on + strand, within DVU0391at 439.359 kb on - strand, within DVU0391at 439.363 kb on + strand, within DVU0391at 439.399 kb on + strand, within DVU0391at 439.404 kb on + strand, within DVU0391at 439.449 kb on - strand, within DVU0391at 439.479 kb on + strand, within DVU0391at 439.479 kb on + strand, within DVU0391at 439.530 kb on - strand, within DVU0391at 439.549 kb on + strand, within DVU0391at 439.665 kb on - strand, within DVU0391at 439.665 kb on - strand, within DVU0391at 439.673 kb on + strand, within DVU0391at 439.806 kb on + strand, within DVU0391at 439.855 kb on + strand, within DVU0391at 439.857 kb on - strand, within DVU0391at 440.024 kb on - strandat 440.030 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
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436,681 + DVU0388 0.62 -0.3
436,690 + DVU0388 0.63 -0.2
436,724 + DVU0388 0.68 +0.3
436,731 + DVU0388 0.68 +0.2
436,852 - DVU0388 0.84 -0.7
436,879 + DVU0388 0.88 +0.8
436,976 - +0.4
437,016 + -0.3
437,018 + +1.8
437,071 - DVU0389 0.15 -0.5
437,116 + DVU0389 0.21 +0.3
437,124 - DVU0389 0.23 +1.2
437,154 + DVU0389 0.27 +0.2
437,162 - DVU0389 0.28 +1.0
437,181 + DVU0389 0.31 +1.8
437,181 + DVU0389 0.31 +0.8
437,181 + DVU0389 0.31 +0.8
437,205 + DVU0389 0.35 +0.9
437,245 + DVU0389 0.40 +0.8
437,260 - DVU0389 0.43 -0.7
437,270 - DVU0389 0.44 -0.2
437,270 - DVU0389 0.44 -0.4
437,270 - DVU0389 0.44 +2.8
437,299 + DVU0389 0.48 +3.6
437,317 - DVU0389 0.51 +0.3
437,320 + DVU0389 0.52 +0.7
437,325 + DVU0389 0.52 +0.9
437,325 + DVU0389 0.52 +0.1
437,333 - DVU0389 0.53 -0.5
437,358 + DVU0389 0.57 -0.5
437,358 + DVU0389 0.57 +0.5
437,358 + DVU0389 0.57 +1.4
437,366 - DVU0389 0.58 -0.1
437,366 - DVU0389 0.58 -1.1
437,366 - DVU0389 0.58 -0.2
437,366 - DVU0389 0.58 +0.1
437,499 + DVU0389 0.78 -0.1
437,564 - DVU0389 0.88 -0.3
437,597 + -0.2
437,649 - -0.4
437,660 + +0.2
437,668 + -0.4
437,676 - -0.2
437,676 - -0.6
437,789 - -1.6
437,916 - glcD DVU0390 0.18 +0.9
437,919 + glcD DVU0390 0.18 -0.9
437,937 + glcD DVU0390 0.19 -0.5
438,022 + glcD DVU0390 0.25 -1.1
438,083 + glcD DVU0390 0.30 -1.0
438,083 + glcD DVU0390 0.30 -0.8
438,091 - glcD DVU0390 0.30 -0.8
438,244 + glcD DVU0390 0.41 -0.9
438,253 - glcD DVU0390 0.42 +1.8
438,270 - glcD DVU0390 0.43 +0.1
438,288 - glcD DVU0390 0.45 -1.0
438,295 - glcD DVU0390 0.45 -0.5
438,317 - glcD DVU0390 0.47 -1.3
438,336 - glcD DVU0390 0.48 -2.2
438,343 + glcD DVU0390 0.49 -0.2
438,350 + glcD DVU0390 0.49 +0.1
438,350 + glcD DVU0390 0.49 -0.5
438,351 - glcD DVU0390 0.49 +1.8
438,357 - glcD DVU0390 0.50 -1.0
438,358 - glcD DVU0390 0.50 -0.6
438,395 + glcD DVU0390 0.52 -0.5
438,440 + glcD DVU0390 0.56 +2.8
438,450 + glcD DVU0390 0.56 -0.6
438,598 + glcD DVU0390 0.67 -0.0
438,598 + glcD DVU0390 0.67 -1.5
438,634 + glcD DVU0390 0.70 -0.6
438,642 - glcD DVU0390 0.70 -2.8
438,660 + glcD DVU0390 0.71 -0.7
438,691 - glcD DVU0390 0.74 +0.4
438,691 - glcD DVU0390 0.74 +0.8
438,837 + glcD DVU0390 0.84 -1.2
438,869 + glcD DVU0390 0.87 -0.8
438,912 + glcD DVU0390 0.90 +1.8
438,935 - +0.8
438,984 - -0.2
438,996 - -0.2
439,043 + -1.0
439,043 + -0.2
439,050 - +0.8
439,070 - +1.8
439,070 - -0.2
439,070 - -0.3
439,074 + -0.1
439,074 + -0.9
439,217 - DVU0391 0.11 +0.8
439,285 + DVU0391 0.18 +0.8
439,359 - DVU0391 0.26 -0.6
439,363 + DVU0391 0.26 -0.4
439,399 + DVU0391 0.30 -1.1
439,404 + DVU0391 0.31 +1.0
439,449 - DVU0391 0.35 -0.5
439,479 + DVU0391 0.39 +0.2
439,479 + DVU0391 0.39 -1.2
439,530 - DVU0391 0.44 -0.2
439,549 + DVU0391 0.46 -1.0
439,665 - DVU0391 0.58 +1.2
439,665 - DVU0391 0.58 +0.2
439,673 + DVU0391 0.59 -0.1
439,806 + DVU0391 0.73 -0.2
439,855 + DVU0391 0.79 -1.6
439,857 - DVU0391 0.79 +1.4
440,024 - +0.3
440,030 - -0.5

Or see this region's nucleotide sequence