Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0251 and DVU0252 are separated by 335 nucleotides DVU0252 and DVU0253 are separated by 147 nucleotides DVU0253 and DVU0255 are separated by 509 nucleotides
DVU0251: DVU0251 - membrane protein, putative (TIGR), at 285,367 to 286,329
DVU0251
DVU0252: DVU0252 - hypothetical protein (TIGR), at 286,665 to 286,874
DVU0252
DVU0253: DVU0253 - oxidoreductase, FAD/iron-sulfur cluster-binding domain protein (TIGR), at 287,022 to 289,847
DVU0253
DVU0255: DVU0255 - hypothetical protein (TIGR), at 290,357 to 290,911
DVU0255
Position (kb) 287
288
289
290 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 286.022 kb on - strand, within DVU0251 at 286.049 kb on + strand, within DVU0251 at 286.056 kb on + strand, within DVU0251 at 286.111 kb on + strand, within DVU0251 at 286.148 kb on - strand, within DVU0251 at 286.218 kb on + strand, within DVU0251 at 286.236 kb on + strand at 286.290 kb on - strand at 286.301 kb on + strand at 286.335 kb on - strand at 286.730 kb on + strand, within DVU0252 at 286.803 kb on + strand, within DVU0252 at 286.805 kb on + strand, within DVU0252 at 286.874 kb on + strand at 286.897 kb on + strand at 286.915 kb on - strand at 286.939 kb on - strand at 286.966 kb on + strand at 286.992 kb on - strand at 287.032 kb on + strand at 287.035 kb on - strand at 287.102 kb on + strand at 287.102 kb on + strand at 287.102 kb on + strand at 287.104 kb on - strand at 287.110 kb on - strand at 287.134 kb on + strand at 287.140 kb on + strand at 287.158 kb on - strand at 287.167 kb on - strand at 287.183 kb on + strand at 287.191 kb on - strand at 287.257 kb on + strand at 287.335 kb on - strand, within DVU0253 at 287.444 kb on + strand, within DVU0253 at 287.444 kb on + strand, within DVU0253 at 287.452 kb on - strand, within DVU0253 at 287.506 kb on - strand, within DVU0253 at 287.507 kb on + strand, within DVU0253 at 287.515 kb on + strand, within DVU0253 at 287.529 kb on - strand, within DVU0253 at 287.529 kb on - strand, within DVU0253 at 287.535 kb on - strand, within DVU0253 at 287.577 kb on - strand, within DVU0253 at 287.577 kb on - strand, within DVU0253 at 287.615 kb on - strand, within DVU0253 at 287.754 kb on + strand, within DVU0253 at 287.858 kb on + strand, within DVU0253 at 288.022 kb on - strand, within DVU0253 at 288.072 kb on + strand, within DVU0253 at 288.079 kb on + strand, within DVU0253 at 288.091 kb on + strand, within DVU0253 at 288.092 kb on - strand, within DVU0253 at 288.118 kb on - strand, within DVU0253 at 288.118 kb on - strand, within DVU0253 at 288.118 kb on - strand, within DVU0253 at 288.128 kb on - strand, within DVU0253 at 288.147 kb on + strand, within DVU0253 at 288.167 kb on + strand, within DVU0253 at 288.175 kb on - strand, within DVU0253 at 288.198 kb on - strand, within DVU0253 at 288.198 kb on - strand, within DVU0253 at 288.240 kb on - strand, within DVU0253 at 288.249 kb on + strand, within DVU0253 at 288.249 kb on + strand, within DVU0253 at 288.363 kb on + strand, within DVU0253 at 288.424 kb on + strand, within DVU0253 at 288.425 kb on - strand, within DVU0253 at 288.518 kb on - strand, within DVU0253 at 288.696 kb on - strand, within DVU0253 at 288.697 kb on + strand, within DVU0253 at 288.717 kb on - strand, within DVU0253 at 288.721 kb on + strand, within DVU0253 at 288.721 kb on + strand, within DVU0253 at 288.742 kb on + strand, within DVU0253 at 288.766 kb on + strand, within DVU0253 at 288.847 kb on + strand, within DVU0253 at 288.855 kb on - strand, within DVU0253 at 288.915 kb on - strand, within DVU0253 at 288.922 kb on + strand, within DVU0253 at 288.947 kb on - strand, within DVU0253 at 288.977 kb on + strand, within DVU0253 at 288.977 kb on + strand, within DVU0253 at 288.978 kb on - strand, within DVU0253 at 289.025 kb on - strand, within DVU0253 at 289.102 kb on - strand, within DVU0253 at 289.112 kb on - strand, within DVU0253 at 289.141 kb on - strand, within DVU0253 at 289.160 kb on - strand, within DVU0253 at 289.163 kb on - strand, within DVU0253 at 289.169 kb on - strand, within DVU0253 at 289.176 kb on - strand, within DVU0253 at 289.246 kb on - strand, within DVU0253 at 289.289 kb on - strand, within DVU0253 at 289.289 kb on - strand, within DVU0253 at 289.289 kb on - strand, within DVU0253 at 289.307 kb on + strand, within DVU0253 at 289.314 kb on + strand, within DVU0253 at 289.330 kb on - strand, within DVU0253 at 289.335 kb on - strand, within DVU0253 at 289.368 kb on - strand, within DVU0253 at 289.397 kb on - strand, within DVU0253 at 289.530 kb on - strand, within DVU0253 at 289.573 kb on - strand at 289.638 kb on + strand at 289.659 kb on - strand at 289.684 kb on + strand at 289.723 kb on - strand at 289.793 kb on - strand at 289.842 kb on - strand at 289.852 kb on - strand at 289.948 kb on + strand at 289.948 kb on + strand at 289.967 kb on - strand at 289.992 kb on + strand at 290.000 kb on - strand at 290.082 kb on + strand at 290.082 kb on + strand at 290.090 kb on - strand at 290.090 kb on - strand at 290.261 kb on + strand at 290.365 kb on - strand at 290.406 kb on + strand at 290.414 kb on - strand, within DVU0255 at 290.493 kb on - strand, within DVU0255 at 290.564 kb on - strand, within DVU0255 at 290.599 kb on - strand, within DVU0255 at 290.601 kb on - strand, within DVU0255 at 290.623 kb on - strand, within DVU0255 at 290.650 kb on - strand, within DVU0255 at 290.669 kb on + strand, within DVU0255 at 290.677 kb on - strand, within DVU0255 at 290.677 kb on - strand, within DVU0255 at 290.689 kb on + strand, within DVU0255 at 290.693 kb on - strand, within DVU0255 at 290.697 kb on - strand, within DVU0255 at 290.701 kb on + strand, within DVU0255 at 290.701 kb on + strand, within DVU0255 at 290.709 kb on - strand, within DVU0255 at 290.709 kb on - strand, within DVU0255 at 290.713 kb on + strand, within DVU0255 at 290.731 kb on + strand, within DVU0255 at 290.769 kb on + strand, within DVU0255 at 290.777 kb on + strand, within DVU0255 at 290.777 kb on - strand, within DVU0255 at 290.808 kb on + strand, within DVU0255 at 290.808 kb on + strand, within DVU0255 at 290.808 kb on - strand, within DVU0255 at 290.840 kb on - strand, within DVU0255
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract remove 286,022 - DVU0251 0.68 +0.3 286,049 + DVU0251 0.71 +1.8 286,056 + DVU0251 0.72 -0.6 286,111 + DVU0251 0.77 +2.8 286,148 - DVU0251 0.81 +1.4 286,218 + DVU0251 0.88 -1.2 286,236 + +0.8 286,290 - +0.3 286,301 + -1.9 286,335 - +0.4 286,730 + DVU0252 0.31 +0.8 286,803 + DVU0252 0.66 -0.4 286,805 + DVU0252 0.67 -1.1 286,874 + -1.4 286,897 + +0.7 286,915 - -0.4 286,939 - -1.6 286,966 + +0.4 286,992 - +0.3 287,032 + -0.3 287,035 - +1.1 287,102 + +1.4 287,102 + +1.8 287,102 + +0.2 287,104 - -0.6 287,110 - -1.0 287,134 + -0.1 287,140 + +0.5 287,158 - +1.8 287,167 - +1.8 287,183 + -0.4 287,191 - +0.2 287,257 + -0.2 287,335 - DVU0253 0.11 -0.6 287,444 + DVU0253 0.15 +1.8 287,444 + DVU0253 0.15 +1.4 287,452 - DVU0253 0.15 -0.2 287,506 - DVU0253 0.17 +0.8 287,507 + DVU0253 0.17 +0.2 287,515 + DVU0253 0.17 +3.2 287,529 - DVU0253 0.18 +0.2 287,529 - DVU0253 0.18 -0.1 287,535 - DVU0253 0.18 -0.2 287,577 - DVU0253 0.20 -0.6 287,577 - DVU0253 0.20 -0.2 287,615 - DVU0253 0.21 -0.0 287,754 + DVU0253 0.26 +0.8 287,858 + DVU0253 0.30 +0.4 288,022 - DVU0253 0.35 +1.2 288,072 + DVU0253 0.37 -0.4 288,079 + DVU0253 0.37 +0.8 288,091 + DVU0253 0.38 +0.1 288,092 - DVU0253 0.38 +2.2 288,118 - DVU0253 0.39 +0.6 288,118 - DVU0253 0.39 -0.3 288,118 - DVU0253 0.39 -0.3 288,128 - DVU0253 0.39 -0.3 288,147 + DVU0253 0.40 +0.3 288,167 + DVU0253 0.41 -0.0 288,175 - DVU0253 0.41 -0.2 288,198 - DVU0253 0.42 +1.2 288,198 - DVU0253 0.42 +0.2 288,240 - DVU0253 0.43 +0.2 288,249 + DVU0253 0.43 -0.3 288,249 + DVU0253 0.43 +0.0 288,363 + DVU0253 0.47 -0.5 288,424 + DVU0253 0.50 +4.3 288,425 - DVU0253 0.50 +0.1 288,518 - DVU0253 0.53 +0.3 288,696 - DVU0253 0.59 +1.2 288,697 + DVU0253 0.59 +0.5 288,717 - DVU0253 0.60 +0.4 288,721 + DVU0253 0.60 +0.2 288,721 + DVU0253 0.60 +0.2 288,742 + DVU0253 0.61 -0.6 288,766 + DVU0253 0.62 -0.8 288,847 + DVU0253 0.65 +0.5 288,855 - DVU0253 0.65 -0.2 288,915 - DVU0253 0.67 +0.5 288,922 + DVU0253 0.67 -0.2 288,947 - DVU0253 0.68 -0.5 288,977 + DVU0253 0.69 -1.8 288,977 + DVU0253 0.69 +0.8 288,978 - DVU0253 0.69 -0.8 289,025 - DVU0253 0.71 -0.3 289,102 - DVU0253 0.74 +2.4 289,112 - DVU0253 0.74 +1.5 289,141 - DVU0253 0.75 +0.2 289,160 - DVU0253 0.76 +0.9 289,163 - DVU0253 0.76 -0.6 289,169 - DVU0253 0.76 -0.6 289,176 - DVU0253 0.76 +0.2 289,246 - DVU0253 0.79 +0.6 289,289 - DVU0253 0.80 +0.1 289,289 - DVU0253 0.80 -0.2 289,289 - DVU0253 0.80 -0.5 289,307 + DVU0253 0.81 -0.4 289,314 + DVU0253 0.81 -0.1 289,330 - DVU0253 0.82 +1.3 289,335 - DVU0253 0.82 -0.5 289,368 - DVU0253 0.83 +1.8 289,397 - DVU0253 0.84 +0.2 289,530 - DVU0253 0.89 -1.2 289,573 - +3.1 289,638 + -0.2 289,659 - +0.0 289,684 + -0.1 289,723 - +1.2 289,793 - -0.2 289,842 - +1.2 289,852 - -0.7 289,948 + -0.6 289,948 + -0.3 289,967 - -0.2 289,992 + +2.5 290,000 - +0.8 290,082 + +0.4 290,082 + -0.9 290,090 - +0.6 290,090 - -0.8 290,261 + +1.8 290,365 - -0.8 290,406 + +0.8 290,414 - DVU0255 0.10 -0.8 290,493 - DVU0255 0.25 -0.6 290,564 - DVU0255 0.37 -0.9 290,599 - DVU0255 0.44 -0.7 290,601 - DVU0255 0.44 -0.9 290,623 - DVU0255 0.48 -1.3 290,650 - DVU0255 0.53 -0.5 290,669 + DVU0255 0.56 -0.5 290,677 - DVU0255 0.58 +0.2 290,677 - DVU0255 0.58 +0.2 290,689 + DVU0255 0.60 -1.5 290,693 - DVU0255 0.61 -0.8 290,697 - DVU0255 0.61 +0.6 290,701 + DVU0255 0.62 -0.9 290,701 + DVU0255 0.62 +1.2 290,709 - DVU0255 0.63 +0.5 290,709 - DVU0255 0.63 +0.1 290,713 + DVU0255 0.64 -0.4 290,731 + DVU0255 0.67 +0.2 290,769 + DVU0255 0.74 -0.4 290,777 + DVU0255 0.76 -0.6 290,777 - DVU0255 0.76 -1.9 290,808 + DVU0255 0.81 -0.3 290,808 + DVU0255 0.81 +2.5 290,808 - DVU0255 0.81 +0.9 290,840 - DVU0255 0.87 -1.2
Or see this region's nucleotide sequence