Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0186 and DVU0187 are separated by 421 nucleotides DVU0187 and pseudo-tRNA are separated by 829 nucleotides
DVU0186: DVU0186 - conserved hypothetical protein (TIGR), at 230,021 to 230,800
DVU0186
DVU0187: DVU0187 - GGDEF domain protein (TIGR), at 231,222 to 232,313
DVU0187
DVU_tRNA-Pseudo-1: pseudo-tRNA - pseudogene tRNA with anticodon TTT (VIMSS-AUTO), at 233,143 to 233,215
pseudo-tRNA
Position (kb) 231
232
233 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 230.228 kb on + strand, within DVU0186 at 230.229 kb on + strand, within DVU0186 at 230.234 kb on - strand, within DVU0186 at 230.317 kb on - strand, within DVU0186 at 230.330 kb on - strand, within DVU0186 at 230.479 kb on + strand, within DVU0186 at 230.620 kb on + strand, within DVU0186 at 230.748 kb on + strand at 230.824 kb on + strand at 230.832 kb on - strand at 230.963 kb on + strand at 230.963 kb on + strand at 230.963 kb on + strand at 230.971 kb on - strand at 230.971 kb on - strand at 230.971 kb on - strand at 231.004 kb on + strand at 231.004 kb on + strand at 231.004 kb on + strand at 231.040 kb on + strand at 231.263 kb on + strand at 231.304 kb on - strand at 231.320 kb on + strand at 231.322 kb on + strand at 231.323 kb on - strand at 231.340 kb on + strand, within DVU0187 at 231.348 kb on - strand, within DVU0187 at 231.352 kb on + strand, within DVU0187 at 231.352 kb on + strand, within DVU0187 at 231.352 kb on + strand, within DVU0187 at 231.352 kb on + strand, within DVU0187 at 231.352 kb on + strand, within DVU0187 at 231.352 kb on + strand, within DVU0187 at 231.360 kb on - strand, within DVU0187 at 231.360 kb on - strand, within DVU0187 at 231.360 kb on - strand, within DVU0187 at 231.360 kb on - strand, within DVU0187 at 231.360 kb on - strand, within DVU0187 at 231.360 kb on - strand, within DVU0187 at 231.360 kb on - strand, within DVU0187 at 231.382 kb on + strand, within DVU0187 at 231.431 kb on - strand, within DVU0187 at 231.504 kb on + strand, within DVU0187 at 231.598 kb on - strand, within DVU0187 at 231.598 kb on - strand, within DVU0187 at 231.598 kb on - strand, within DVU0187 at 231.663 kb on - strand, within DVU0187 at 231.694 kb on - strand, within DVU0187 at 231.751 kb on - strand, within DVU0187 at 231.786 kb on - strand, within DVU0187 at 231.866 kb on + strand, within DVU0187 at 231.879 kb on + strand, within DVU0187 at 231.887 kb on - strand, within DVU0187 at 231.887 kb on - strand, within DVU0187 at 231.935 kb on + strand, within DVU0187 at 231.985 kb on + strand, within DVU0187 at 232.026 kb on + strand, within DVU0187 at 232.026 kb on + strand, within DVU0187 at 232.140 kb on + strand, within DVU0187 at 232.208 kb on - strand at 232.216 kb on - strand at 232.276 kb on - strand at 232.375 kb on + strand at 232.447 kb on - strand at 232.507 kb on - strand at 232.518 kb on + strand at 232.518 kb on + strand at 232.518 kb on + strand at 232.573 kb on - strand at 232.575 kb on - strand at 232.577 kb on + strand at 232.577 kb on + strand at 232.577 kb on + strand at 232.577 kb on + strand at 232.585 kb on - strand at 232.585 kb on - strand at 232.585 kb on - strand at 232.585 kb on - strand at 232.585 kb on - strand at 232.585 kb on - strand at 232.585 kb on - strand at 232.585 kb on - strand at 232.585 kb on - strand at 232.585 kb on - strand at 232.585 kb on - strand at 232.585 kb on - strand at 232.593 kb on - strand at 232.600 kb on - strand at 232.608 kb on - strand at 232.612 kb on - strand at 232.617 kb on + strand at 232.646 kb on + strand at 232.672 kb on - strand at 232.672 kb on - strand at 232.685 kb on + strand at 232.694 kb on - strand at 232.725 kb on + strand at 232.725 kb on + strand at 232.733 kb on - strand at 232.733 kb on - strand at 232.766 kb on - strand at 232.784 kb on - strand at 232.807 kb on + strand at 232.815 kb on - strand at 232.838 kb on - strand at 232.840 kb on - strand at 232.840 kb on - strand at 232.876 kb on + strand at 232.876 kb on + strand at 232.876 kb on + strand at 232.876 kb on + strand at 232.876 kb on + strand at 232.884 kb on - strand at 232.884 kb on - strand at 232.884 kb on - strand at 232.884 kb on - strand at 232.884 kb on - strand at 232.884 kb on - strand at 232.886 kb on + strand at 232.896 kb on + strand at 232.917 kb on - strand at 233.041 kb on - strand at 233.041 kb on - strand at 233.058 kb on + strand at 233.096 kb on - strand at 233.256 kb on + strand at 233.270 kb on + strand at 233.297 kb on + strand at 233.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract remove 230,228 + DVU0186 0.27 +0.2 230,229 + DVU0186 0.27 +1.2 230,234 - DVU0186 0.27 -0.6 230,317 - DVU0186 0.38 -3.7 230,330 - DVU0186 0.40 +0.2 230,479 + DVU0186 0.59 -2.6 230,620 + DVU0186 0.77 -1.9 230,748 + -3.6 230,824 + -1.6 230,832 - -2.0 230,963 + +0.2 230,963 + +0.5 230,963 + -0.1 230,971 - -0.7 230,971 - +0.1 230,971 - -0.6 231,004 + -0.5 231,004 + +2.3 231,004 + -0.9 231,040 + +0.8 231,263 + +1.2 231,304 - -0.6 231,320 + +1.8 231,322 + -2.3 231,323 - -1.2 231,340 + DVU0187 0.11 +0.5 231,348 - DVU0187 0.12 -1.0 231,352 + DVU0187 0.12 -1.4 231,352 + DVU0187 0.12 +1.8 231,352 + DVU0187 0.12 -0.3 231,352 + DVU0187 0.12 -0.2 231,352 + DVU0187 0.12 -0.2 231,352 + DVU0187 0.12 -0.8 231,360 - DVU0187 0.13 -0.2 231,360 - DVU0187 0.13 -0.8 231,360 - DVU0187 0.13 +0.5 231,360 - DVU0187 0.13 -0.4 231,360 - DVU0187 0.13 -0.9 231,360 - DVU0187 0.13 +1.8 231,360 - DVU0187 0.13 -0.2 231,382 + DVU0187 0.15 +0.0 231,431 - DVU0187 0.19 -0.9 231,504 + DVU0187 0.26 +0.8 231,598 - DVU0187 0.34 -1.2 231,598 - DVU0187 0.34 -0.7 231,598 - DVU0187 0.34 -1.1 231,663 - DVU0187 0.40 -0.5 231,694 - DVU0187 0.43 +0.2 231,751 - DVU0187 0.48 +0.8 231,786 - DVU0187 0.52 +1.8 231,866 + DVU0187 0.59 -0.7 231,879 + DVU0187 0.60 +1.8 231,887 - DVU0187 0.61 -1.2 231,887 - DVU0187 0.61 -0.5 231,935 + DVU0187 0.65 +1.8 231,985 + DVU0187 0.70 -1.2 232,026 + DVU0187 0.74 -0.8 232,026 + DVU0187 0.74 +0.8 232,140 + DVU0187 0.84 -0.6 232,208 - +1.8 232,216 - +0.3 232,276 - +0.4 232,375 + -0.8 232,447 - +1.8 232,507 - -0.1 232,518 + -1.4 232,518 + +0.2 232,518 + +0.2 232,573 - -2.9 232,575 - -0.2 232,577 + +0.8 232,577 + -0.4 232,577 + -0.2 232,577 + +0.8 232,585 - +0.8 232,585 - -0.4 232,585 - +0.2 232,585 - -0.6 232,585 - -0.7 232,585 - -1.0 232,585 - -0.7 232,585 - +3.1 232,585 - -0.8 232,585 - +1.8 232,585 - -0.5 232,585 - +0.2 232,593 - +0.2 232,600 - -1.1 232,608 - -0.7 232,612 - +1.8 232,617 + +0.8 232,646 + +0.6 232,672 - -1.1 232,672 - -1.5 232,685 + +0.0 232,694 - -0.8 232,725 + -0.9 232,725 + -1.4 232,733 - -1.9 232,733 - -0.1 232,766 - +0.2 232,784 - -0.3 232,807 + -0.1 232,815 - +1.8 232,838 - +0.4 232,840 - -0.2 232,840 - +2.8 232,876 + -0.6 232,876 + -0.8 232,876 + -0.4 232,876 + -0.0 232,876 + -0.8 232,884 - -1.7 232,884 - +0.8 232,884 - -1.1 232,884 - -0.2 232,884 - -0.6 232,884 - -1.0 232,886 + -0.7 232,896 + -0.3 232,917 - -0.2 233,041 - -0.2 233,041 - -0.7 233,058 + -2.2 233,096 - -0.5 233,256 + +0.8 233,270 + +0.8 233,297 + -0.9 233,297 + -0.5
Or see this region's nucleotide sequence