Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt modB and DVU0182 are separated by 364 nucleotides DVU0182 and DVU0183 are separated by 167 nucleotides
DVU0181: modB - molybdenum ABC transporter, permease protein (TIGR), at 225,350 to 226,051
modB
DVU0182: DVU0182 - radical SAM domain protein (TIGR), at 226,416 to 227,339
DVU0182
DVU0183: DVU0183 - methyl-accepting chemotaxis protein (TIGR), at 227,507 to 229,276
DVU0183
Position (kb) 226
227
228 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 225.437 kb on - strand, within modB at 225.439 kb on - strand, within modB at 225.489 kb on - strand, within modB at 225.495 kb on - strand, within modB at 225.549 kb on + strand, within modB at 225.628 kb on - strand, within modB at 225.643 kb on + strand, within modB at 225.651 kb on - strand, within modB at 225.651 kb on - strand, within modB at 225.651 kb on - strand, within modB at 225.716 kb on - strand, within modB at 225.767 kb on + strand, within modB at 225.802 kb on - strand, within modB at 225.802 kb on - strand, within modB at 225.829 kb on + strand, within modB at 225.837 kb on - strand, within modB at 225.913 kb on - strand, within modB at 225.937 kb on + strand, within modB at 226.018 kb on + strand at 226.047 kb on + strand at 226.082 kb on - strand at 226.209 kb on + strand at 226.278 kb on - strand at 226.287 kb on + strand at 226.295 kb on - strand at 226.300 kb on - strand at 226.310 kb on - strand at 226.361 kb on + strand at 226.379 kb on - strand at 226.391 kb on + strand at 226.417 kb on - strand at 226.417 kb on - strand at 226.463 kb on + strand at 226.518 kb on - strand, within DVU0182 at 226.549 kb on - strand, within DVU0182 at 226.597 kb on + strand, within DVU0182 at 226.597 kb on + strand, within DVU0182 at 226.597 kb on + strand, within DVU0182 at 226.605 kb on - strand, within DVU0182 at 226.605 kb on - strand, within DVU0182 at 226.605 kb on - strand, within DVU0182 at 226.630 kb on + strand, within DVU0182 at 226.660 kb on - strand, within DVU0182 at 226.789 kb on + strand, within DVU0182 at 226.789 kb on + strand, within DVU0182 at 226.790 kb on + strand, within DVU0182 at 226.797 kb on - strand, within DVU0182 at 226.805 kb on + strand, within DVU0182 at 226.810 kb on + strand, within DVU0182 at 226.934 kb on - strand, within DVU0182 at 226.936 kb on + strand, within DVU0182 at 226.939 kb on - strand, within DVU0182 at 226.939 kb on - strand, within DVU0182 at 226.944 kb on - strand, within DVU0182 at 226.958 kb on + strand, within DVU0182 at 227.017 kb on - strand, within DVU0182 at 227.029 kb on - strand, within DVU0182 at 227.078 kb on + strand, within DVU0182 at 227.078 kb on + strand, within DVU0182 at 227.082 kb on - strand, within DVU0182 at 227.086 kb on - strand, within DVU0182 at 227.155 kb on - strand, within DVU0182 at 227.168 kb on + strand, within DVU0182 at 227.182 kb on - strand, within DVU0182 at 227.215 kb on + strand, within DVU0182 at 227.222 kb on - strand, within DVU0182 at 227.294 kb on + strand at 227.308 kb on - strand at 227.313 kb on - strand at 227.315 kb on - strand at 227.331 kb on - strand at 227.358 kb on + strand at 227.412 kb on - strand at 227.430 kb on - strand at 227.449 kb on - strand at 227.468 kb on - strand at 227.483 kb on - strand at 227.490 kb on + strand at 227.504 kb on + strand at 227.635 kb on + strand at 227.635 kb on + strand at 227.680 kb on - strand at 227.697 kb on + strand, within DVU0183 at 227.730 kb on - strand, within DVU0183 at 227.749 kb on - strand, within DVU0183 at 227.814 kb on + strand, within DVU0183 at 227.829 kb on + strand, within DVU0183 at 227.829 kb on + strand, within DVU0183 at 227.837 kb on - strand, within DVU0183 at 227.846 kb on + strand, within DVU0183 at 227.864 kb on - strand, within DVU0183 at 227.864 kb on - strand, within DVU0183 at 227.874 kb on - strand, within DVU0183 at 227.885 kb on + strand, within DVU0183 at 227.913 kb on - strand, within DVU0183 at 227.935 kb on - strand, within DVU0183 at 228.093 kb on + strand, within DVU0183 at 228.115 kb on - strand, within DVU0183 at 228.189 kb on - strand, within DVU0183 at 228.221 kb on - strand, within DVU0183 at 228.265 kb on + strand, within DVU0183 at 228.273 kb on - strand, within DVU0183 at 228.318 kb on + strand, within DVU0183
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract remove 225,437 - modB DVU0181 0.12 -0.8 225,439 - modB DVU0181 0.13 -1.1 225,489 - modB DVU0181 0.20 -2.5 225,495 - modB DVU0181 0.21 +0.2 225,549 + modB DVU0181 0.28 +0.0 225,628 - modB DVU0181 0.40 -0.2 225,643 + modB DVU0181 0.42 -0.7 225,651 - modB DVU0181 0.43 -0.2 225,651 - modB DVU0181 0.43 +0.2 225,651 - modB DVU0181 0.43 -0.9 225,716 - modB DVU0181 0.52 +0.1 225,767 + modB DVU0181 0.59 -0.4 225,802 - modB DVU0181 0.64 +1.2 225,802 - modB DVU0181 0.64 -1.7 225,829 + modB DVU0181 0.68 +0.8 225,837 - modB DVU0181 0.69 -0.0 225,913 - modB DVU0181 0.80 +1.8 225,937 + modB DVU0181 0.84 -1.6 226,018 + +0.0 226,047 + -0.3 226,082 - +0.8 226,209 + -0.4 226,278 - -0.8 226,287 + -0.3 226,295 - -0.1 226,300 - -0.1 226,310 - +0.2 226,361 + -0.6 226,379 - -1.0 226,391 + +0.5 226,417 - -0.2 226,417 - -0.8 226,463 + -2.1 226,518 - DVU0182 0.11 +1.0 226,549 - DVU0182 0.14 -0.3 226,597 + DVU0182 0.20 -0.8 226,597 + DVU0182 0.20 +1.8 226,597 + DVU0182 0.20 -0.8 226,605 - DVU0182 0.20 -0.0 226,605 - DVU0182 0.20 +0.8 226,605 - DVU0182 0.20 -0.1 226,630 + DVU0182 0.23 +0.4 226,660 - DVU0182 0.26 +0.5 226,789 + DVU0182 0.40 -0.4 226,789 + DVU0182 0.40 +1.8 226,790 + DVU0182 0.40 +3.7 226,797 - DVU0182 0.41 -0.2 226,805 + DVU0182 0.42 +2.8 226,810 + DVU0182 0.43 -0.0 226,934 - DVU0182 0.56 +1.2 226,936 + DVU0182 0.56 +0.2 226,939 - DVU0182 0.57 +1.8 226,939 - DVU0182 0.57 -0.7 226,944 - DVU0182 0.57 -0.7 226,958 + DVU0182 0.59 -0.2 227,017 - DVU0182 0.65 +0.4 227,029 - DVU0182 0.66 +3.1 227,078 + DVU0182 0.72 -0.2 227,078 + DVU0182 0.72 -0.0 227,082 - DVU0182 0.72 -0.8 227,086 - DVU0182 0.73 +1.2 227,155 - DVU0182 0.80 -0.4 227,168 + DVU0182 0.81 +0.4 227,182 - DVU0182 0.83 -0.4 227,215 + DVU0182 0.86 -1.1 227,222 - DVU0182 0.87 +1.4 227,294 + +0.1 227,308 - -0.1 227,313 - +1.2 227,315 - -0.7 227,331 - -0.3 227,358 + -0.7 227,412 - -0.2 227,430 - -0.8 227,449 - +2.3 227,468 - -1.5 227,483 - +1.0 227,490 + +2.4 227,504 + -0.9 227,635 + -0.4 227,635 + +1.8 227,680 - +0.2 227,697 + DVU0183 0.11 +0.0 227,730 - DVU0183 0.13 -0.2 227,749 - DVU0183 0.14 -0.4 227,814 + DVU0183 0.17 -0.2 227,829 + DVU0183 0.18 -0.2 227,829 + DVU0183 0.18 +0.7 227,837 - DVU0183 0.19 -0.8 227,846 + DVU0183 0.19 -0.8 227,864 - DVU0183 0.20 -0.1 227,864 - DVU0183 0.20 +0.2 227,874 - DVU0183 0.21 +0.8 227,885 + DVU0183 0.21 +0.2 227,913 - DVU0183 0.23 +2.8 227,935 - DVU0183 0.24 -0.2 228,093 + DVU0183 0.33 +1.8 228,115 - DVU0183 0.34 +1.1 228,189 - DVU0183 0.39 -0.7 228,221 - DVU0183 0.40 -0.2 228,265 + DVU0183 0.43 -2.2 228,273 - DVU0183 0.43 -0.1 228,318 + DVU0183 0.46 +0.8
Or see this region's nucleotide sequence