Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0025

Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0022 and DVU0024 are separated by 229 nucleotidesDVU0024 and DVU0025 are separated by 75 nucleotidesDVU0025 and tRNA-Ala are separated by 173 nucleotidestRNA-Ala and DVU0026 are separated by 364 nucleotides DVU0022: DVU0022 - HAMP domain/GGDEF domain/EAL domain protein (TIGR), at 24,857 to 27,238 DVU0022 DVU0024: DVU0024 - conserved hypothetical protein (TIGR), at 27,468 to 27,638 DVU0024 DVU0025: DVU0025 - sensory box histidine kinase (TIGR), at 27,714 to 29,873 DVU0025 DVU_tRNA-Ala-2: tRNA-Ala - tRNA with anticodon GGC for Ala (VIMSS-AUTO), at 30,047 to 30,122 tRNA-Ala DVU0026: DVU0026 - conserved hypothetical protein (TIGR), at 30,487 to 31,059 DVU0026 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 26.716 kb on - strand, within DVU0022at 26.735 kb on + strand, within DVU0022at 26.743 kb on - strand, within DVU0022at 26.754 kb on + strand, within DVU0022at 26.806 kb on - strand, within DVU0022at 26.811 kb on - strand, within DVU0022at 26.847 kb on + strand, within DVU0022at 26.852 kb on + strand, within DVU0022at 26.905 kb on - strand, within DVU0022at 26.954 kb on - strand, within DVU0022at 26.988 kb on + strand, within DVU0022at 26.988 kb on + strand, within DVU0022at 27.026 kb on + strandat 27.070 kb on + strandat 27.078 kb on - strandat 27.105 kb on + strandat 27.129 kb on - strandat 27.145 kb on - strandat 27.147 kb on + strandat 27.150 kb on - strandat 27.270 kb on + strandat 27.270 kb on + strandat 27.278 kb on - strandat 27.278 kb on - strandat 27.288 kb on - strandat 27.372 kb on - strandat 27.481 kb on - strandat 27.598 kb on + strand, within DVU0024at 27.632 kb on + strandat 27.673 kb on - strandat 27.673 kb on - strandat 27.719 kb on - strandat 27.723 kb on + strandat 27.727 kb on + strandat 27.760 kb on - strandat 27.765 kb on + strandat 27.777 kb on - strandat 27.870 kb on + strandat 27.956 kb on + strand, within DVU0025at 27.958 kb on + strand, within DVU0025at 27.968 kb on + strand, within DVU0025at 28.023 kb on - strand, within DVU0025at 28.042 kb on + strand, within DVU0025at 28.060 kb on - strand, within DVU0025at 28.143 kb on + strand, within DVU0025at 28.162 kb on + strand, within DVU0025at 28.187 kb on + strand, within DVU0025at 28.232 kb on - strand, within DVU0025at 28.240 kb on + strand, within DVU0025at 28.336 kb on + strand, within DVU0025at 28.336 kb on + strand, within DVU0025at 28.344 kb on - strand, within DVU0025at 28.344 kb on - strand, within DVU0025at 28.406 kb on + strand, within DVU0025at 28.407 kb on + strand, within DVU0025at 28.407 kb on + strand, within DVU0025at 28.408 kb on - strand, within DVU0025at 28.415 kb on - strand, within DVU0025at 28.435 kb on + strand, within DVU0025at 28.456 kb on + strand, within DVU0025at 28.456 kb on + strand, within DVU0025at 28.524 kb on - strand, within DVU0025at 28.602 kb on + strand, within DVU0025at 28.620 kb on + strand, within DVU0025at 28.641 kb on - strand, within DVU0025at 28.666 kb on + strand, within DVU0025at 28.669 kb on - strand, within DVU0025at 28.702 kb on - strand, within DVU0025at 28.718 kb on + strand, within DVU0025at 28.738 kb on + strand, within DVU0025at 28.776 kb on + strand, within DVU0025at 28.781 kb on + strand, within DVU0025at 28.789 kb on - strand, within DVU0025at 28.789 kb on - strand, within DVU0025at 28.794 kb on - strand, within DVU0025at 28.817 kb on + strand, within DVU0025at 28.832 kb on - strand, within DVU0025at 28.839 kb on + strand, within DVU0025at 28.854 kb on - strand, within DVU0025at 28.854 kb on - strand, within DVU0025at 28.889 kb on - strand, within DVU0025at 28.924 kb on - strand, within DVU0025at 28.954 kb on + strand, within DVU0025at 28.957 kb on - strand, within DVU0025at 28.959 kb on + strand, within DVU0025at 28.962 kb on - strand, within DVU0025at 28.962 kb on - strand, within DVU0025at 28.967 kb on - strand, within DVU0025at 29.095 kb on + strand, within DVU0025at 29.124 kb on + strand, within DVU0025at 29.126 kb on - strand, within DVU0025at 29.163 kb on - strand, within DVU0025at 29.217 kb on + strand, within DVU0025at 29.225 kb on - strand, within DVU0025at 29.237 kb on + strand, within DVU0025at 29.241 kb on + strand, within DVU0025at 29.271 kb on + strand, within DVU0025at 29.271 kb on + strand, within DVU0025at 29.279 kb on - strand, within DVU0025at 29.352 kb on + strand, within DVU0025at 29.390 kb on - strand, within DVU0025at 29.463 kb on + strand, within DVU0025at 29.497 kb on + strand, within DVU0025at 29.546 kb on + strand, within DVU0025at 29.569 kb on - strand, within DVU0025at 29.571 kb on + strand, within DVU0025at 29.579 kb on + strand, within DVU0025at 29.596 kb on + strand, within DVU0025at 29.676 kb on + strandat 29.702 kb on + strandat 29.722 kb on - strandat 29.758 kb on - strandat 29.778 kb on - strandat 29.789 kb on + strandat 29.866 kb on - strandat 29.906 kb on - strandat 29.933 kb on - strandat 29.940 kb on + strandat 29.952 kb on - strandat 30.091 kb on + strand, within tRNA-Alaat 30.227 kb on + strandat 30.240 kb on - strandat 30.305 kb on + strandat 30.366 kb on - strandat 30.379 kb on + strandat 30.485 kb on - strandat 30.708 kb on + strand, within DVU0026at 30.763 kb on - strand, within DVU0026at 30.809 kb on - strand, within DVU0026at 30.818 kb on + strand, within DVU0026at 30.833 kb on + strand, within DVU0026at 30.849 kb on - strand, within DVU0026

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
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26,716 - DVU0022 0.78 -1.0
26,735 + DVU0022 0.79 +0.2
26,743 - DVU0022 0.79 -1.0
26,754 + DVU0022 0.80 -0.3
26,806 - DVU0022 0.82 -0.1
26,811 - DVU0022 0.82 -0.7
26,847 + DVU0022 0.84 -1.3
26,852 + DVU0022 0.84 -0.6
26,905 - DVU0022 0.86 -0.9
26,954 - DVU0022 0.88 -0.4
26,988 + DVU0022 0.89 -0.7
26,988 + DVU0022 0.89 -1.8
27,026 + -0.3
27,070 + -0.2
27,078 - -0.0
27,105 + -0.1
27,129 - -1.5
27,145 - -0.1
27,147 + -0.8
27,150 - +0.9
27,270 + -0.2
27,270 + +0.1
27,278 - -1.0
27,278 - +0.5
27,288 - +0.6
27,372 - -0.2
27,481 - -0.0
27,598 + DVU0024 0.76 -1.1
27,632 + -0.0
27,673 - -0.0
27,673 - -0.5
27,719 - -1.2
27,723 + -0.2
27,727 + +0.2
27,760 - -0.8
27,765 + -0.8
27,777 - -0.7
27,870 + +0.2
27,956 + DVU0025 0.11 +1.8
27,958 + DVU0025 0.11 -0.8
27,968 + DVU0025 0.12 -0.8
28,023 - DVU0025 0.14 -0.1
28,042 + DVU0025 0.15 +0.6
28,060 - DVU0025 0.16 -0.5
28,143 + DVU0025 0.20 +0.3
28,162 + DVU0025 0.21 +0.0
28,187 + DVU0025 0.22 -0.3
28,232 - DVU0025 0.24 -0.5
28,240 + DVU0025 0.24 -0.8
28,336 + DVU0025 0.29 -0.4
28,336 + DVU0025 0.29 -0.2
28,344 - DVU0025 0.29 -0.3
28,344 - DVU0025 0.29 +1.5
28,406 + DVU0025 0.32 +3.4
28,407 + DVU0025 0.32 -0.6
28,407 + DVU0025 0.32 -0.7
28,408 - DVU0025 0.32 -0.1
28,415 - DVU0025 0.32 -0.9
28,435 + DVU0025 0.33 -0.4
28,456 + DVU0025 0.34 -0.6
28,456 + DVU0025 0.34 +2.8
28,524 - DVU0025 0.38 +1.8
28,602 + DVU0025 0.41 -0.1
28,620 + DVU0025 0.42 -0.4
28,641 - DVU0025 0.43 -0.1
28,666 + DVU0025 0.44 -0.6
28,669 - DVU0025 0.44 -0.1
28,702 - DVU0025 0.46 -0.3
28,718 + DVU0025 0.46 +3.5
28,738 + DVU0025 0.47 -0.0
28,776 + DVU0025 0.49 +0.2
28,781 + DVU0025 0.49 +3.2
28,789 - DVU0025 0.50 -0.0
28,789 - DVU0025 0.50 -0.3
28,794 - DVU0025 0.50 -0.6
28,817 + DVU0025 0.51 -2.6
28,832 - DVU0025 0.52 +0.7
28,839 + DVU0025 0.52 -0.6
28,854 - DVU0025 0.53 -1.2
28,854 - DVU0025 0.53 +0.8
28,889 - DVU0025 0.54 +0.1
28,924 - DVU0025 0.56 -0.8
28,954 + DVU0025 0.57 -0.2
28,957 - DVU0025 0.58 -0.2
28,959 + DVU0025 0.58 -0.5
28,962 - DVU0025 0.58 +0.8
28,962 - DVU0025 0.58 -0.1
28,967 - DVU0025 0.58 -0.3
29,095 + DVU0025 0.64 -1.1
29,124 + DVU0025 0.65 -1.9
29,126 - DVU0025 0.65 -1.0
29,163 - DVU0025 0.67 -0.4
29,217 + DVU0025 0.70 -0.1
29,225 - DVU0025 0.70 -1.9
29,237 + DVU0025 0.71 +1.8
29,241 + DVU0025 0.71 +0.4
29,271 + DVU0025 0.72 -1.6
29,271 + DVU0025 0.72 -0.6
29,279 - DVU0025 0.72 +0.2
29,352 + DVU0025 0.76 +0.6
29,390 - DVU0025 0.78 -0.4
29,463 + DVU0025 0.81 +0.1
29,497 + DVU0025 0.83 -0.4
29,546 + DVU0025 0.85 -0.4
29,569 - DVU0025 0.86 +3.9
29,571 + DVU0025 0.86 +0.7
29,579 + DVU0025 0.86 -0.3
29,596 + DVU0025 0.87 -0.2
29,676 + -0.1
29,702 + -0.0
29,722 - -0.2
29,758 - +3.3
29,778 - -0.2
29,789 + +0.2
29,866 - -0.3
29,906 - +0.2
29,933 - +0.2
29,940 + -1.4
29,952 - -1.4
30,091 + tRNA-Ala DVU_tRNA-Ala-2 0.58 +0.2
30,227 + -1.0
30,240 - +0.8
30,305 + -1.0
30,366 - -0.6
30,379 + -0.2
30,485 - +3.0
30,708 + DVU0026 0.39 -0.5
30,763 - DVU0026 0.48 +0.8
30,809 - DVU0026 0.56 +0.0
30,818 + DVU0026 0.58 -0.1
30,833 + DVU0026 0.60 -0.3
30,849 - DVU0026 0.63 -0.2

Or see this region's nucleotide sequence