Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1993

Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
2,071,211	-				-1.0
2,071,297	+				-1.0
2,071,305	-				-1.0
2,071,315	-				-0.2
2,071,333	-				+0.5
2,071,334	-				-1.0
2,071,406	-				+2.1
2,071,440	-				+0.1
2,071,612	-	cat	DVU1992	0.29	-1.1
2,071,617	-	cat	DVU1992	0.30	+0.2
2,071,630	+	cat	DVU1992	0.32	-1.2
2,071,638	-	cat	DVU1992	0.33	-0.4
2,071,650	+	cat	DVU1992	0.35	-0.7
2,071,800	+	cat	DVU1992	0.59	-1.1
2,071,806	+	cat	DVU1992	0.60	-0.8
2,071,990	+	cat	DVU1992	0.88	+0.6
2,071,998	-	cat	DVU1992	0.89	+3.6
2,071,998	-	cat	DVU1992	0.89	+0.5
2,072,046	+				+0.3
2,072,052	-				+1.3
2,072,058	+				-0.4
2,072,066	-				-0.6
2,072,095	-				+2.1
2,072,191	+				+0.2
2,072,264	+				+2.1
2,072,344	+				+2.1
2,072,352	-				-0.0
2,072,461	+				-0.3
2,072,469	-				-0.2
2,072,551	-	ctpF	DVU1993	0.12	+0.5
2,072,612	+	ctpF	DVU1993	0.15	-1.0
2,072,650	+	ctpF	DVU1993	0.16	+0.5
2,072,790	+	ctpF	DVU1993	0.21	-0.7
2,072,818	+	ctpF	DVU1993	0.22	-0.5
2,072,876	-	ctpF	DVU1993	0.24	-0.5
2,072,876	-	ctpF	DVU1993	0.24	-0.7
2,072,934	-	ctpF	DVU1993	0.26	-1.5
2,072,939	-	ctpF	DVU1993	0.26	-0.2
2,072,950	-	ctpF	DVU1993	0.27	-0.1
2,073,029	+	ctpF	DVU1993	0.30	+0.3
2,073,036	+	ctpF	DVU1993	0.30	+0.6
2,073,044	-	ctpF	DVU1993	0.30	-1.1
2,073,044	-	ctpF	DVU1993	0.30	-0.2
2,073,141	+	ctpF	DVU1993	0.34	+1.8
2,073,141	+	ctpF	DVU1993	0.34	-0.8
2,073,149	-	ctpF	DVU1993	0.34	-0.6
2,073,192	-	ctpF	DVU1993	0.36	-0.2
2,073,205	-	ctpF	DVU1993	0.36	-0.6
2,073,297	+	ctpF	DVU1993	0.39	-0.5
2,073,305	-	ctpF	DVU1993	0.40	+0.1
2,073,305	-	ctpF	DVU1993	0.40	+1.5
2,073,305	-	ctpF	DVU1993	0.40	-0.6
2,073,371	+	ctpF	DVU1993	0.42	-0.2
2,073,376	+	ctpF	DVU1993	0.42	+0.5
2,073,378	+	ctpF	DVU1993	0.42	+0.5
2,073,378	+	ctpF	DVU1993	0.42	+0.5
2,073,384	-	ctpF	DVU1993	0.43	-0.7
2,073,384	-	ctpF	DVU1993	0.43	-0.5
2,073,412	+	ctpF	DVU1993	0.44	-0.1
2,073,420	-	ctpF	DVU1993	0.44	-1.0
2,073,437	+	ctpF	DVU1993	0.45	+1.1
2,073,443	-	ctpF	DVU1993	0.45	+3.5
2,073,517	+	ctpF	DVU1993	0.47	-0.7
2,073,528	+	ctpF	DVU1993	0.48	+0.2
2,073,535	-	ctpF	DVU1993	0.48	+0.0
2,073,548	-	ctpF	DVU1993	0.49	+0.5
2,073,584	+	ctpF	DVU1993	0.50	-0.6
2,073,640	-	ctpF	DVU1993	0.52	+3.5
2,073,739	+	ctpF	DVU1993	0.56	-0.2
2,073,769	-	ctpF	DVU1993	0.57	-0.4
2,073,793	-	ctpF	DVU1993	0.57	-0.4
2,073,850	-	ctpF	DVU1993	0.60	-1.1
2,073,937	+	ctpF	DVU1993	0.63	+0.5
2,073,945	-	ctpF	DVU1993	0.63	-0.7
2,074,019	-	ctpF	DVU1993	0.66	+2.4
2,074,114	+	ctpF	DVU1993	0.69	-0.9
2,074,139	-	ctpF	DVU1993	0.70	-1.7
2,074,181	+	ctpF	DVU1993	0.72	+1.1
2,074,184	-	ctpF	DVU1993	0.72	+3.1
2,074,189	-	ctpF	DVU1993	0.72	-0.7
2,074,279	-	ctpF	DVU1993	0.75	+0.2
2,074,307	+	ctpF	DVU1993	0.76	-0.7
2,074,442	-	ctpF	DVU1993	0.81	+2.1
2,074,526	+	ctpF	DVU1993	0.84	+3.1
2,074,578	+	ctpF	DVU1993	0.86	-0.8
2,074,582	-	ctpF	DVU1993	0.86	-0.3
2,074,593	+	ctpF	DVU1993	0.87	-1.5
2,074,601	-	ctpF	DVU1993	0.87	-1.0
2,074,601	-	ctpF	DVU1993	0.87	-1.6
2,074,628	+	ctpF	DVU1993	0.88	+0.5
2,074,644	+	ctpF	DVU1993	0.88	-0.5
2,074,674	+	ctpF	DVU1993	0.89	+0.9
2,074,682	-	ctpF	DVU1993	0.90	-0.4
2,074,684	+	ctpF	DVU1993	0.90	-0.1
2,074,684	+	ctpF	DVU1993	0.90	+1.8
2,074,687	-	ctpF	DVU1993	0.90	+1.6
2,074,721	+				+1.1
2,074,731	+				-0.2
2,074,731	+				-0.2
2,074,756	+				-0.1
2,074,758	+				+1.1
2,074,820	-				-0.2
2,074,864	-				-0.4
2,074,872	-				-1.0
2,074,916	-				-0.4
2,074,944	+				+0.4
2,075,184	+				-0.4
2,075,192	-				-1.4
2,075,274	-				-0.3
2,075,353	+				-0.4
2,075,418	-				+1.5
2,075,440	+				-1.3
2,075,443	-				-0.1
2,075,452	+				-0.1
2,075,452	+				+1.1
2,075,460	-				+0.3
2,075,460	-				-0.2
2,075,574	-				+1.7
2,075,618	+				-0.9
2,075,618	+				-1.0
2,075,712	+				-0.9
2,075,719	+				+1.8
2,075,727	-				-0.4
2,075,790	+				-0.6
2,075,853	-				-0.5
2,075,859	+				-0.6
2,075,859	+				-0.9
2,075,860	+				-2.4
2,075,930	+				-0.6
2,075,930	+				-1.9
2,075,930	+				-0.4
2,075,938	-				+2.1
2,075,942	+				+2.1