Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0976

Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0974 and DVU0975 are separated by 32 nucleotidesDVU0975 and DVU0976 are separated by 142 nucleotidesDVU0976 and DORF8571 are separated by 126 nucleotidesDORF8571 and DVU0978 are separated by 170 nucleotides DVU0974: DVU0974 - hypothetical protein (TIGR), at 1,070,600 to 1,070,938 DVU0974 DVU0975: DVU0975 - conserved hypothetical protein (TIGR), at 1,070,971 to 1,071,531 DVU0975 DVU0976: DVU0976 - response regulator (TIGR), at 1,071,674 to 1,072,837 DVU0976 DORF8571: DORF8571 - SEED: FIG00603598: hypothetical protein, at 1,072,964 to 1,073,371 DORF8571 DVU0978: DVU0978 - ABC transporter, periplasmic substrate-binding protein, putative (TIGR), at 1,073,542 to 1,074,396 DVU0978 Position (kb) 1071 1072 1073Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1070.896 kb on + strand, within DVU0974at 1070.897 kb on - strand, within DVU0974at 1071.027 kb on - strand, within DVU0975at 1071.066 kb on - strand, within DVU0975at 1071.122 kb on + strand, within DVU0975at 1071.122 kb on + strand, within DVU0975at 1071.414 kb on + strand, within DVU0975at 1071.540 kb on - strandat 1071.611 kb on + strandat 1071.619 kb on - strandat 1071.685 kb on - strandat 1071.755 kb on + strandat 1071.790 kb on + strandat 1071.810 kb on + strand, within DVU0976at 1071.818 kb on - strand, within DVU0976at 1071.823 kb on - strand, within DVU0976at 1071.866 kb on - strand, within DVU0976at 1071.894 kb on + strand, within DVU0976at 1071.981 kb on - strand, within DVU0976at 1072.017 kb on + strand, within DVU0976at 1072.025 kb on - strand, within DVU0976at 1072.109 kb on + strand, within DVU0976at 1072.117 kb on - strand, within DVU0976at 1072.117 kb on - strand, within DVU0976at 1072.289 kb on + strand, within DVU0976at 1072.331 kb on - strand, within DVU0976at 1072.431 kb on + strand, within DVU0976at 1072.456 kb on + strand, within DVU0976at 1072.456 kb on - strand, within DVU0976at 1072.464 kb on + strand, within DVU0976at 1072.485 kb on + strand, within DVU0976at 1072.485 kb on + strand, within DVU0976at 1072.610 kb on + strand, within DVU0976at 1072.794 kb on + strandat 1072.812 kb on - strandat 1073.099 kb on + strand, within DORF8571at 1073.418 kb on - strandat 1073.430 kb on + strandat 1073.621 kb on - strandat 1073.669 kb on + strand, within DVU0978at 1073.686 kb on - strand, within DVU0978at 1073.689 kb on + strand, within DVU0978at 1073.726 kb on + strand, within DVU0978at 1073.726 kb on + strand, within DVU0978at 1073.731 kb on + strand, within DVU0978at 1073.734 kb on - strand, within DVU0978at 1073.747 kb on + strand, within DVU0978

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
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1,070,896 + DVU0974 0.87 -0.0
1,070,897 - DVU0974 0.88 -0.5
1,071,027 - DVU0975 0.10 -2.2
1,071,066 - DVU0975 0.17 -1.3
1,071,122 + DVU0975 0.27 +3.1
1,071,122 + DVU0975 0.27 +2.0
1,071,414 + DVU0975 0.79 +0.2
1,071,540 - -0.3
1,071,611 + +2.0
1,071,619 - +0.7
1,071,685 - +0.6
1,071,755 + +0.4
1,071,790 + +0.4
1,071,810 + DVU0976 0.12 +1.3
1,071,818 - DVU0976 0.12 +1.0
1,071,823 - DVU0976 0.13 +0.4
1,071,866 - DVU0976 0.16 +1.2
1,071,894 + DVU0976 0.19 +0.9
1,071,981 - DVU0976 0.26 +1.6
1,072,017 + DVU0976 0.29 +1.3
1,072,025 - DVU0976 0.30 +1.7
1,072,109 + DVU0976 0.37 +1.5
1,072,117 - DVU0976 0.38 +0.9
1,072,117 - DVU0976 0.38 +1.3
1,072,289 + DVU0976 0.53 +1.1
1,072,331 - DVU0976 0.56 +1.0
1,072,431 + DVU0976 0.65 +2.0
1,072,456 + DVU0976 0.67 -0.2
1,072,456 - DVU0976 0.67 +1.8
1,072,464 + DVU0976 0.68 +0.6
1,072,485 + DVU0976 0.70 +1.6
1,072,485 + DVU0976 0.70 +1.0
1,072,610 + DVU0976 0.80 +2.0
1,072,794 + +1.4
1,072,812 - +1.0
1,073,099 + DORF8571 0.33 -0.5
1,073,418 - +2.0
1,073,430 + -1.8
1,073,621 - +0.1
1,073,669 + DVU0978 0.15 -0.3
1,073,686 - DVU0978 0.17 +1.4
1,073,689 + DVU0978 0.17 -1.6
1,073,726 + DVU0978 0.22 +2.0
1,073,726 + DVU0978 0.22 +1.4
1,073,731 + DVU0978 0.22 -0.5
1,073,734 - DVU0978 0.22 -0.3
1,073,747 + DVU0978 0.24 +2.0

Or see this region's nucleotide sequence