Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0857

Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthemB and nirJ-1 are separated by 9 nucleotidesnirJ-1 and DVU0858 are separated by 315 nucleotides DVU0856: hemB - porphobilinogen synthase (TIGR), at 945,759 to 946,751 hemB DVU0857: nirJ-1 - radical SAM domain protein (TIGR), at 946,761 to 947,942 nirJ-1 DVU0858: DVU0858 - lipoprotein, putative (TIGR), at 948,258 to 948,941 DVU0858 Position (kb) 946 947 948Strain fitness (log2 ratio) -1 0 1 2 3at 945.778 kb on - strandat 948.113 kb on - strandat 948.189 kb on + strandat 948.201 kb on + strandat 948.223 kb on + strandat 948.312 kb on + strandat 948.322 kb on + strandat 948.345 kb on + strand, within DVU0858at 948.394 kb on - strand, within DVU0858at 948.403 kb on + strand, within DVU0858at 948.571 kb on + strand, within DVU0858at 948.579 kb on - strand, within DVU0858at 948.603 kb on - strand, within DVU0858at 948.664 kb on - strand, within DVU0858at 948.664 kb on - strand, within DVU0858at 948.794 kb on - strand, within DVU0858at 948.795 kb on - strand, within DVU0858at 948.854 kb on - strand, within DVU0858at 948.894 kb on + strandat 948.894 kb on + strandat 948.902 kb on - strandat 948.925 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
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945,778 - +0.6
948,113 - -0.3
948,189 + -0.5
948,201 + +0.1
948,223 + +1.0
948,312 + +2.9
948,322 + +2.4
948,345 + DVU0858 0.13 +1.0
948,394 - DVU0858 0.20 +3.1
948,403 + DVU0858 0.21 +2.5
948,571 + DVU0858 0.46 +2.9
948,579 - DVU0858 0.47 +3.1
948,603 - DVU0858 0.50 +2.9
948,664 - DVU0858 0.59 +2.9
948,664 - DVU0858 0.59 +2.8
948,794 - DVU0858 0.78 +2.8
948,795 - DVU0858 0.79 +1.6
948,854 - DVU0858 0.87 -0.3
948,894 + +1.6
948,894 + +3.3
948,902 - +2.8
948,925 + +2.9

Or see this region's nucleotide sequence