Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt luxO and DVU0680 overlap by 13 nucleotides DVU0680 and DVU0681 overlap by 139 nucleotides
DVU0679: luxO - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 750,641 to 752,107
luxO
DVU0680: DVU0680 - sensory box histidine kinase (TIGR), at 752,095 to 754,167
DVU0680
DVU0681: DVU0681 - sensor histidine kinase/response regulator (TIGR), at 754,029 to 756,032
DVU0681
Position (kb) 752
753
754
755 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 751.143 kb on + strand, within luxO at 751.202 kb on - strand, within luxO at 751.202 kb on - strand, within luxO at 751.230 kb on - strand, within luxO at 751.272 kb on + strand, within luxO at 751.420 kb on - strand, within luxO at 751.442 kb on + strand, within luxO at 751.442 kb on + strand, within luxO at 751.680 kb on + strand, within luxO at 751.745 kb on + strand, within luxO at 751.819 kb on - strand, within luxO at 751.874 kb on - strand, within luxO at 751.884 kb on - strand, within luxO at 751.886 kb on - strand, within luxO at 751.924 kb on + strand, within luxO at 751.987 kb on - strand at 752.022 kb on + strand at 752.035 kb on - strand at 752.055 kb on + strand at 752.084 kb on + strand at 752.117 kb on + strand at 752.187 kb on - strand at 752.293 kb on - strand at 752.302 kb on + strand at 752.302 kb on + strand at 752.302 kb on + strand at 752.302 kb on + strand at 752.310 kb on - strand, within DVU0680 at 752.378 kb on - strand, within DVU0680 at 752.397 kb on - strand, within DVU0680 at 752.461 kb on - strand, within DVU0680 at 752.483 kb on + strand, within DVU0680 at 752.501 kb on + strand, within DVU0680 at 752.511 kb on + strand, within DVU0680 at 752.511 kb on + strand, within DVU0680 at 752.519 kb on - strand, within DVU0680 at 752.555 kb on - strand, within DVU0680 at 752.615 kb on - strand, within DVU0680 at 752.626 kb on + strand, within DVU0680 at 752.629 kb on - strand, within DVU0680 at 752.634 kb on - strand, within DVU0680 at 752.650 kb on + strand, within DVU0680 at 752.655 kb on + strand, within DVU0680 at 752.663 kb on - strand, within DVU0680 at 752.663 kb on - strand, within DVU0680 at 752.663 kb on - strand, within DVU0680 at 752.849 kb on + strand, within DVU0680 at 752.849 kb on + strand, within DVU0680 at 752.857 kb on - strand, within DVU0680 at 752.871 kb on + strand, within DVU0680 at 752.957 kb on + strand, within DVU0680 at 752.965 kb on - strand, within DVU0680 at 752.965 kb on - strand, within DVU0680 at 752.978 kb on + strand, within DVU0680 at 753.033 kb on - strand, within DVU0680 at 753.048 kb on + strand, within DVU0680 at 753.092 kb on - strand, within DVU0680 at 753.119 kb on + strand, within DVU0680 at 753.128 kb on + strand, within DVU0680 at 753.140 kb on + strand, within DVU0680 at 753.141 kb on - strand, within DVU0680 at 753.221 kb on + strand, within DVU0680 at 753.221 kb on + strand, within DVU0680 at 753.227 kb on - strand, within DVU0680 at 753.239 kb on - strand, within DVU0680 at 753.271 kb on + strand, within DVU0680 at 753.292 kb on + strand, within DVU0680 at 753.364 kb on + strand, within DVU0680 at 753.373 kb on - strand, within DVU0680 at 753.435 kb on - strand, within DVU0680 at 753.512 kb on - strand, within DVU0680 at 753.512 kb on - strand, within DVU0680 at 753.600 kb on - strand, within DVU0680 at 753.925 kb on - strand, within DVU0680 at 754.030 kb on - strand at 754.141 kb on - strand at 754.164 kb on + strand at 754.164 kb on + strand at 754.172 kb on - strand at 754.299 kb on + strand, within DVU0681 at 754.335 kb on - strand, within DVU0681 at 754.355 kb on - strand, within DVU0681 at 754.463 kb on - strand, within DVU0681 at 754.636 kb on + strand, within DVU0681 at 754.636 kb on + strand, within DVU0681 at 754.754 kb on + strand, within DVU0681 at 754.910 kb on + strand, within DVU0681 at 755.016 kb on + strand, within DVU0681 at 755.024 kb on - strand, within DVU0681 at 755.164 kb on + strand, within DVU0681
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract remove 751,143 + luxO DVU0679 0.34 +1.4 751,202 - luxO DVU0679 0.38 -0.6 751,202 - luxO DVU0679 0.38 -0.5 751,230 - luxO DVU0679 0.40 +0.3 751,272 + luxO DVU0679 0.43 +2.0 751,420 - luxO DVU0679 0.53 -0.0 751,442 + luxO DVU0679 0.55 +0.1 751,442 + luxO DVU0679 0.55 -0.3 751,680 + luxO DVU0679 0.71 -0.9 751,745 + luxO DVU0679 0.75 +1.0 751,819 - luxO DVU0679 0.80 -0.8 751,874 - luxO DVU0679 0.84 -0.2 751,884 - luxO DVU0679 0.85 -0.0 751,886 - luxO DVU0679 0.85 -0.6 751,924 + luxO DVU0679 0.87 +0.3 751,987 - +2.0 752,022 + -0.4 752,035 - +1.0 752,055 + -0.2 752,084 + -0.5 752,117 + -0.5 752,187 - +0.4 752,293 - +0.6 752,302 + -0.4 752,302 + -0.8 752,302 + -0.5 752,302 + -0.5 752,310 - DVU0680 0.10 -1.5 752,378 - DVU0680 0.14 +1.0 752,397 - DVU0680 0.15 +1.0 752,461 - DVU0680 0.18 -1.0 752,483 + DVU0680 0.19 -0.4 752,501 + DVU0680 0.20 -1.6 752,511 + DVU0680 0.20 +2.0 752,511 + DVU0680 0.20 -0.6 752,519 - DVU0680 0.20 -0.3 752,555 - DVU0680 0.22 -1.2 752,615 - DVU0680 0.25 +0.8 752,626 + DVU0680 0.26 -0.5 752,629 - DVU0680 0.26 +1.6 752,634 - DVU0680 0.26 -0.5 752,650 + DVU0680 0.27 +1.1 752,655 + DVU0680 0.27 -0.2 752,663 - DVU0680 0.27 -0.6 752,663 - DVU0680 0.27 +0.3 752,663 - DVU0680 0.27 +0.4 752,849 + DVU0680 0.36 -0.2 752,849 + DVU0680 0.36 +1.0 752,857 - DVU0680 0.37 -0.6 752,871 + DVU0680 0.37 -1.0 752,957 + DVU0680 0.42 +0.2 752,965 - DVU0680 0.42 -0.5 752,965 - DVU0680 0.42 +1.4 752,978 + DVU0680 0.43 -0.5 753,033 - DVU0680 0.45 -0.7 753,048 + DVU0680 0.46 +0.1 753,092 - DVU0680 0.48 -0.3 753,119 + DVU0680 0.49 -1.4 753,128 + DVU0680 0.50 +0.6 753,140 + DVU0680 0.50 -0.4 753,141 - DVU0680 0.50 -0.4 753,221 + DVU0680 0.54 +3.7 753,221 + DVU0680 0.54 +0.2 753,227 - DVU0680 0.55 -0.0 753,239 - DVU0680 0.55 -0.2 753,271 + DVU0680 0.57 -0.0 753,292 + DVU0680 0.58 -2.4 753,364 + DVU0680 0.61 +0.1 753,373 - DVU0680 0.62 -0.4 753,435 - DVU0680 0.65 -0.5 753,512 - DVU0680 0.68 +0.2 753,512 - DVU0680 0.68 -0.5 753,600 - DVU0680 0.73 +2.0 753,925 - DVU0680 0.88 +1.0 754,030 - -0.6 754,141 - -0.0 754,164 + +1.0 754,164 + -1.0 754,172 - -0.1 754,299 + DVU0681 0.13 +1.0 754,335 - DVU0681 0.15 +0.1 754,355 - DVU0681 0.16 +1.0 754,463 - DVU0681 0.22 -0.0 754,636 + DVU0681 0.30 +1.0 754,636 + DVU0681 0.30 +1.0 754,754 + DVU0681 0.36 +1.0 754,910 + DVU0681 0.44 +1.0 755,016 + DVU0681 0.49 +3.0 755,024 - DVU0681 0.50 +0.4 755,164 + DVU0681 0.57 +2.0
Or see this region's nucleotide sequence